Mercadante D - Search Results

1

Release of linker histone from the nucleosome driven by polyelectrolyte competition with a disordered protein.

Heidarsson PO, Mercadante D, Sottini A, Nettels D, Borgia MB, Borgia A, Kilic S, Fierz B, Best RB, Schuler B. Heidarsson PO, et al. Among authors: mercadante d. Nat Chem. 2022 Feb;14(2):224-231. doi: 10.1038/s41557-021-00839-3. Epub 2022 Jan 6. Nat Chem. 2022. PMID: 34992286 Free article.

2

A proline switch explains kinetic heterogeneity in a coupled folding and binding reaction.

Zosel F, Mercadante D, Nettels D, Schuler B. Zosel F, et al. Among authors: mercadante d. Nat Commun. 2018 Aug 20;9(1):3332. doi: 10.1038/s41467-018-05725-0. Nat Commun. 2018. PMID: 30127362 Free PMC article.

3

Protein intrinsic disorder on a dynamic nucleosomal landscape.

Bjarnason S, Ruidiaz SF, McIvor J, Mercadante D, Heidarsson PO. Bjarnason S, et al. Among authors: mercadante d. Prog Mol Biol Transl Sci. 2021;183:295-354. doi: 10.1016/bs.pmbts.2021.06.006. Epub 2021 Jul 28. Prog Mol Biol Transl Sci. 2021. PMID: 34656332 Review.

4

Simulating Polyproline II-Helix-Rich Peptides with the Latest Kirkwood-Buff Force Field: A Direct Comparison with AMBER and CHARMM.

McIvor JAP, Larsen DS, Mercadante D. McIvor JAP, et al. Among authors: mercadante d. J Phys Chem B. 2022 Oct 13;126(40):7833-7846. doi: 10.1021/acs.jpcb.2c03837. Epub 2022 Sep 20. J Phys Chem B. 2022. PMID: 36125334

5

Design of a Protein with Improved Thermal Stability by an Evolution-Based Generative Model.

Tian P, Lemaire A, Sénéchal F, Habrylo O, Antonietti V, Sonnet P, Lefebvre V, Isa Marin F, Best RB, Pelloux J, Mercadante D. Tian P, et al. Among authors: mercadante d. Angew Chem Int Ed Engl. 2022 Dec 12;61(50):e202202711. doi: 10.1002/anie.202202711. Epub 2022 Nov 16. Angew Chem Int Ed Engl. 2022. PMID: 36259321 Free PMC article.

6

Multilayered allosteric modulation of coupled folding and binding by phosphorylation, peptidyl-prolyl cis/trans isomerization, and diversity of interaction partners.

Buholzer KJ, McIvor J, Zosel F, Teppich C, Nettels D, Mercadante D, Schuler B. Buholzer KJ, et al. Among authors: mercadante d. J Chem Phys. 2022 Dec 21;157(23):235102. doi: 10.1063/5.0128273. J Chem Phys. 2022. PMID: 36550025 Free article.

7

DNA binding redistributes activation domain ensemble and accessibility in pioneer factor Sox2.

Bjarnason S, McIvor JAP, Prestel A, Demény KS, Bullerjahn JT, Kragelund BB, Mercadante D, Heidarsson PO. Bjarnason S, et al. Among authors: mercadante d. Nat Commun. 2024 Feb 16;15(1):1445. doi: 10.1038/s41467-024-45847-2. Nat Commun. 2024. PMID: 38365983 Free PMC article.

8

Kirkwood-Buff Approach Rescues Overcollapse of a Disordered Protein in Canonical Protein Force Fields.

Mercadante D, Milles S, Fuertes G, Svergun DI, Lemke EA, Gräter F. Mercadante D, et al. J Phys Chem B. 2015 Jun 25;119(25):7975-84. doi: 10.1021/acs.jpcb.5b03440. Epub 2015 Jun 15. J Phys Chem B. 2015. PMID: 26030189

9

Charge Relaying within a Phospho-Motif Rescue Binding Competency of a Disordered Transcription Factor.

McIvor JAP, Larsen DS, Mercadante D. McIvor JAP, et al. Among authors: mercadante d. J Chem Inf Model. 2024 Aug 12;64(15):6041-6052. doi: 10.1021/acs.jcim.4c00286. Epub 2024 Jul 29. J Chem Inf Model. 2024. PMID: 39074869

10

Sampling Long- versus Short-Range Interactions Defines the Ability of Force Fields To Reproduce the Dynamics of Intrinsically Disordered Proteins.

Mercadante D, Wagner JA, Aramburu IV, Lemke EA, Gräter F. Mercadante D, et al. J Chem Theory Comput. 2017 Sep 12;13(9):3964-3974. doi: 10.1021/acs.jctc.7b00143. Epub 2017 Aug 28. J Chem Theory Comput. 2017. PMID: 28805390

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