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Page 1
Mapping transcriptomic vector fields of single cells.
Qiu X, Zhang Y, Martin-Rufino JD, Weng C, Hosseinzadeh S, Yang D, Pogson AN, Hein MY, Hoi Joseph Min K, Wang L, Grody EI, Shurtleff MJ, Yuan R, Xu S, Ma Y, Replogle JM, Lander ES, Darmanis S, Bahar I, Sankaran VG, Xing J, Weissman JS. Qiu X, et al. Among authors: grody ei. Cell. 2022 Feb 17;185(4):690-711.e45. doi: 10.1016/j.cell.2021.12.045. Epub 2022 Feb 1. Cell. 2022. PMID: 35108499 Free PMC article.
Inferring gene regulation from stochastic transcriptional variation across single cells at steady state.
Gupta A, Martin-Rufino JD, Jones TR, Subramanian V, Qiu X, Grody EI, Bloemendal A, Weng C, Niu SY, Min KH, Mehta A, Zhang K, Siraj L, Al' Khafaji A, Sankaran VG, Raychaudhuri S, Cleary B, Grossman S, Lander ES. Gupta A, et al. Among authors: grody ei. Proc Natl Acad Sci U S A. 2022 Aug 23;119(34):e2207392119. doi: 10.1073/pnas.2207392119. Epub 2022 Aug 15. Proc Natl Acad Sci U S A. 2022. PMID: 35969771 Free PMC article.
ClusterMap for multi-scale clustering analysis of spatial gene expression.
He Y, Tang X, Huang J, Ren J, Zhou H, Chen K, Liu A, Shi H, Lin Z, Li Q, Aditham A, Ounadjela J, Grody EI, Shu J, Liu J, Wang X. He Y, et al. Among authors: grody ei. Nat Commun. 2021 Oct 8;12(1):5909. doi: 10.1038/s41467-021-26044-x. Nat Commun. 2021. PMID: 34625546 Free PMC article.
Prediction of single-cell RNA expression profiles in live cells by Raman microscopy with Raman2RNA.
Kobayashi-Kirschvink KJ, Comiter CS, Gaddam S, Joren T, Grody EI, Ounadjela JR, Zhang K, Ge B, Kang JW, Xavier RJ, So PTC, Biancalani T, Shu J, Regev A. Kobayashi-Kirschvink KJ, et al. Among authors: grody ei. Nat Biotechnol. 2024 Jan 10:10.1038/s41587-023-02082-2. doi: 10.1038/s41587-023-02082-2. Online ahead of print. Nat Biotechnol. 2024. PMID: 38200118
Diverse clonal fates emerge upon drug treatment of homogeneous cancer cells.
Goyal Y, Busch GT, Pillai M, Li J, Boe RH, Grody EI, Chelvanambi M, Dardani IP, Emert B, Bodkin N, Braun J, Fingerman D, Kaur A, Jain N, Ravindran PT, Mellis IA, Kiani K, Alicea GM, Fane ME, Ahmed SS, Li H, Chen Y, Chai C, Kaster J, Witt RG, Lazcano R, Ingram DR, Johnson SB, Wani K, Dunagin MC, Lazar AJ, Weeraratna AT, Wargo JA, Herlyn M, Raj A. Goyal Y, et al. Among authors: grody ei. Nature. 2023 Aug;620(7974):651-659. doi: 10.1038/s41586-023-06342-8. Epub 2023 Jul 19. Nature. 2023. PMID: 37468627 Free PMC article.
Toward a systems-level probing of tumor clonality.
Grody EI, Abraham A, Shukla V, Goyal Y. Grody EI, et al. iScience. 2023 Apr 6;26(5):106574. doi: 10.1016/j.isci.2023.106574. eCollection 2023 May 19. iScience. 2023. PMID: 37192968 Free PMC article. Review.
Massively parallel base editing to map variant effects in human hematopoiesis.
Martin-Rufino JD, Castano N, Pang M, Grody EI, Joubran S, Caulier A, Wahlster L, Li T, Qiu X, Riera-Escandell AM, Newby GA, Al'Khafaji A, Chaudhary S, Black S, Weng C, Munson G, Liu DR, Wlodarski MW, Sims K, Oakley JH, Fasano RM, Xavier RJ, Lander ES, Klein DE, Sankaran VG. Martin-Rufino JD, et al. Among authors: grody ei. Cell. 2023 May 25;186(11):2456-2474.e24. doi: 10.1016/j.cell.2023.03.035. Epub 2023 May 2. Cell. 2023. PMID: 37137305 Free PMC article.