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Plotgardener: cultivating precise multi-panel figures in R.
Kramer NE, Davis ES, Wenger CD, Deoudes EM, Parker SM, Love MI, Phanstiel DH. Kramer NE, et al. Bioinformatics. 2022 Mar 28;38(7):2042-2045. doi: 10.1093/bioinformatics/btac057. Bioinformatics. 2022. PMID: 35134826 Free PMC article.
Response eQTLs, chromatin accessibility, and 3D chromatin structure in chondrocytes provide mechanistic insight into osteoarthritis risk.
Kramer NE, Byun S, Coryell P, D'Costa S, Thulson E, Kim H, Parkus SM, Bond ML, Klein ER, Shine J, Chubinskaya S, Love MI, Mohlke KL, Diekman BO, Loeser RF, Phanstiel DH. Kramer NE, et al. bioRxiv [Preprint]. 2024 Oct 31:2024.05.05.592567. doi: 10.1101/2024.05.05.592567. bioRxiv. 2024. PMID: 38952796 Free PMC article. Preprint.
Usefulness of multiparental populations of maize (Zea mays L.) for genome-based prediction.
Lehermeier C, Krämer N, Bauer E, Bauland C, Camisan C, Campo L, Flament P, Melchinger AE, Menz M, Meyer N, Moreau L, Moreno-González J, Ouzunova M, Pausch H, Ranc N, Schipprack W, Schönleben M, Walter H, Charcosset A, Schön CC. Lehermeier C, et al. Genetics. 2014 Sep;198(1):3-16. doi: 10.1534/genetics.114.161943. Genetics. 2014. PMID: 25236445 Free PMC article.
Enhancing genome-enabled prediction by bagging genomic BLUP.
Gianola D, Weigel KA, Krämer N, Stella A, Schön CC. Gianola D, et al. PLoS One. 2014 Apr 10;9(4):e91693. doi: 10.1371/journal.pone.0091693. eCollection 2014. PLoS One. 2014. PMID: 24722227 Free PMC article.
Mariner: explore the Hi-Cs.
Davis ES, Parker SM, Kramer NE, Flores JP, Kiran M, Phanstiel DH. Davis ES, et al. Among authors: kramer ne. Bioinformatics. 2024 Jun 3;40(6):btae352. doi: 10.1093/bioinformatics/btae352. Bioinformatics. 2024. PMID: 38814811 Free PMC article.
40 results