Love MI - Search Results

1

Plotgardener: cultivating precise multi-panel figures in R.

Kramer NE, Davis ES, Wenger CD, Deoudes EM, Parker SM, Love MI, Phanstiel DH. Kramer NE, et al. Among authors: love mi. Bioinformatics. 2022 Mar 28;38(7):2042-2045. doi: 10.1093/bioinformatics/btac057. Bioinformatics. 2022. PMID: 35134826 Free PMC article.

2

Static and Dynamic DNA Loops form AP-1-Bound Activation Hubs during Macrophage Development.

Phanstiel DH, Van Bortle K, Spacek D, Hess GT, Shamim MS, Machol I, Love MI, Aiden EL, Bassik MC, Snyder MP. Phanstiel DH, et al. Among authors: love mi. Mol Cell. 2017 Sep 21;67(6):1037-1048.e6. doi: 10.1016/j.molcel.2017.08.006. Epub 2017 Sep 7. Mol Cell. 2017. PMID: 28890333 Free PMC article.

3

SAFE-clustering: Single-cell Aggregated (from Ensemble) clustering for single-cell RNA-seq data.

Yang Y, Huh R, Culpepper HW, Lin Y, Love MI, Li Y. Yang Y, et al. Among authors: love mi. Bioinformatics. 2019 Apr 15;35(8):1269-1277. doi: 10.1093/bioinformatics/bty793. Bioinformatics. 2019. PMID: 30202935 Free PMC article.

4

Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences.

Zhu A, Ibrahim JG, Love MI. Zhu A, et al. Among authors: love mi. Bioinformatics. 2019 Jun 1;35(12):2084-2092. doi: 10.1093/bioinformatics/bty895. Bioinformatics. 2019. PMID: 30395178 Free PMC article.

5

Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data.

Sarkar H, Srivastava A, Bravo HC, Love MI, Patro R. Sarkar H, et al. Among authors: love mi. Bioinformatics. 2020 Jul 1;36(Suppl_1):i102-i110. doi: 10.1093/bioinformatics/btaa448. Bioinformatics. 2020. PMID: 32657377 Free PMC article.

6

Compression of quantification uncertainty for scRNA-seq counts.

Van Buren S, Sarkar H, Srivastava A, Rashid NU, Patro R, Love MI. Van Buren S, et al. Among authors: love mi. Bioinformatics. 2021 Jul 19;37(12):1699-1707. doi: 10.1093/bioinformatics/btab001. Bioinformatics. 2021. PMID: 33471073 Free PMC article.

7

ACTOR: a latent Dirichlet model to compare expressed isoform proportions to a reference panel.

McCabe SD, Nobel AB, Love MI. McCabe SD, et al. Among authors: love mi. Biostatistics. 2023 Apr 14;24(2):388-405. doi: 10.1093/biostatistics/kxab013. Biostatistics. 2023. PMID: 33948626 Free PMC article.

8

Airpart: interpretable statistical models for analyzing allelic imbalance in single-cell datasets.

Mu W, Sarkar H, Srivastava A, Choi K, Patro R, Love MI. Mu W, et al. Among authors: love mi. Bioinformatics. 2022 May 13;38(10):2773-2780. doi: 10.1093/bioinformatics/btac212. Bioinformatics. 2022. PMID: 35561168 Free PMC article.

9

Temporal analysis suggests a reciprocal relationship between 3D chromatin structure and transcription.

Reed KSM, Davis ES, Bond ML, Cabrera A, Thulson E, Quiroga IY, Cassel S, Woolery KT, Hilton I, Won H, Love MI, Phanstiel DH. Reed KSM, et al. Among authors: love mi. Cell Rep. 2022 Nov 1;41(5):111567. doi: 10.1016/j.celrep.2022.111567. Cell Rep. 2022. PMID: 36323252 Free PMC article.

10

CTCF: an R/bioconductor data package of human and mouse CTCF binding sites.

Dozmorov MG, Mu W, Davis ES, Lee S, Triche TJ Jr, Phanstiel DH, Love MI. Dozmorov MG, et al. Among authors: love mi. Bioinform Adv. 2022 Dec 16;2(1):vbac097. doi: 10.1093/bioadv/vbac097. eCollection 2022. Bioinform Adv. 2022. PMID: 36699364 Free PMC article.

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