Levens D - Search Results

1

Non-equilibrium structural dynamics of supercoiled DNA plasmids exhibits asymmetrical relaxation.

Shaheen C, Hastie C, Metera K, Scott S, Zhang Z, Chen S, Gu G, Weber L, Munsky B, Kouzine F, Levens D, Benham C, Leslie S. Shaheen C, et al. Among authors: levens d. Nucleic Acids Res. 2022 Mar 21;50(5):2754-2764. doi: 10.1093/nar/gkac101. Nucleic Acids Res. 2022. PMID: 35188541 Free PMC article.

2

The dynamic response of upstream DNA to transcription-generated torsional stress.

Kouzine F, Liu J, Sanford S, Chung HJ, Levens D. Kouzine F, et al. Among authors: levens d. Nat Struct Mol Biol. 2004 Nov;11(11):1092-100. doi: 10.1038/nsmb848. Epub 2004 Oct 24. Nat Struct Mol Biol. 2004. PMID: 15502847

3

The FUSE/FBP/FIR/TFIIH system is a molecular machine programming a pulse of c-myc expression.

Liu J, Kouzine F, Nie Z, Chung HJ, Elisha-Feil Z, Weber A, Zhao K, Levens D. Liu J, et al. Among authors: levens d. EMBO J. 2006 May 17;25(10):2119-30. doi: 10.1038/sj.emboj.7601101. Epub 2006 Apr 20. EMBO J. 2006. PMID: 16628215 Free PMC article.

4

Supercoil-driven DNA structures regulate genetic transactions.

Kouzine F, Levens D. Kouzine F, et al. Among authors: levens d. Front Biosci. 2007 May 1;12:4409-23. doi: 10.2741/2398. Front Biosci. 2007. PMID: 17485385 Review.

5

The functional response of upstream DNA to dynamic supercoiling in vivo.

Kouzine F, Sanford S, Elisha-Feil Z, Levens D. Kouzine F, et al. Among authors: levens d. Nat Struct Mol Biol. 2008 Feb;15(2):146-54. doi: 10.1038/nsmb.1372. Epub 2008 Jan 13. Nat Struct Mol Biol. 2008. PMID: 18193062

6

Hierarchical mechanisms build the DNA-binding specificity of FUSE binding protein.

Benjamin LR, Chung HJ, Sanford S, Kouzine F, Liu J, Levens D. Benjamin LR, et al. Among authors: levens d. Proc Natl Acad Sci U S A. 2008 Nov 25;105(47):18296-301. doi: 10.1073/pnas.0803279105. Epub 2008 Nov 17. Proc Natl Acad Sci U S A. 2008. PMID: 19015535 Free PMC article.

7

DNA stress and strain, in silico, in vitro and in vivo.

Levens D, Benham CJ. Levens D, et al. Phys Biol. 2011 Jun;8(3):035011. doi: 10.1088/1478-3975/8/3/035011. Epub 2011 May 13. Phys Biol. 2011. PMID: 21572180 Review.

8

The importance of being supercoiled: how DNA mechanics regulate dynamic processes.

Baranello L, Levens D, Gupta A, Kouzine F. Baranello L, et al. Among authors: levens d. Biochim Biophys Acta. 2012 Jul;1819(7):632-8. doi: 10.1016/j.bbagrm.2011.12.007. Epub 2012 Jan 3. Biochim Biophys Acta. 2012. PMID: 22233557 Free PMC article. Review.

9

Transcription-dependent dynamic supercoiling is a short-range genomic force.

Kouzine F, Gupta A, Baranello L, Wojtowicz D, Ben-Aissa K, Liu J, Przytycka TM, Levens D. Kouzine F, et al. Among authors: levens d. Nat Struct Mol Biol. 2013 Mar;20(3):396-403. doi: 10.1038/nsmb.2517. Epub 2013 Feb 17. Nat Struct Mol Biol. 2013. PMID: 23416947 Free PMC article.

10

The genome-wide distribution of non-B DNA motifs is shaped by operon structure and suggests the transcriptional importance of non-B DNA structures in Escherichia coli.

Du X, Wojtowicz D, Bowers AA, Levens D, Benham CJ, Przytycka TM. Du X, et al. Among authors: levens d. Nucleic Acids Res. 2013 Jul;41(12):5965-77. doi: 10.1093/nar/gkt308. Epub 2013 Apr 25. Nucleic Acids Res. 2013. PMID: 23620297 Free PMC article.

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