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Multiplexed single-cell analysis reveals prognostic and nonprognostic T cell types in human colorectal cancer.
Masuda K, Kornberg A, Miller J, Lin S, Suek N, Botella T, Secener KA, Bacarella AM, Cheng L, Ingham M, Rosario V, Al-Mazrou AM, Lee-Kong SA, Kiran RP, Stoeckius M, Smibert P, Del Portillo A, Oberstein PE, Sims PA, Yan KS, Han A. Masuda K, et al. Among authors: stoeckius m. JCI Insight. 2022 Apr 8;7(7):e154646. doi: 10.1172/jci.insight.154646. JCI Insight. 2022. PMID: 35192548 Free PMC article.
Comprehensive Integration of Single-Cell Data.
Stuart T, Butler A, Hoffman P, Hafemeister C, Papalexi E, Mauck WM 3rd, Hao Y, Stoeckius M, Smibert P, Satija R. Stuart T, et al. Among authors: stoeckius m. Cell. 2019 Jun 13;177(7):1888-1902.e21. doi: 10.1016/j.cell.2019.05.031. Epub 2019 Jun 6. Cell. 2019. PMID: 31178118 Free PMC article.
Simultaneous epitope and transcriptome measurement in single cells.
Stoeckius M, Hafemeister C, Stephenson W, Houck-Loomis B, Chattopadhyay PK, Swerdlow H, Satija R, Smibert P. Stoeckius M, et al. Nat Methods. 2017 Sep;14(9):865-868. doi: 10.1038/nmeth.4380. Epub 2017 Jul 31. Nat Methods. 2017. PMID: 28759029 Free PMC article.
Integrated analysis of multimodal single-cell data.
Hao Y, Hao S, Andersen-Nissen E, Mauck WM 3rd, Zheng S, Butler A, Lee MJ, Wilk AJ, Darby C, Zager M, Hoffman P, Stoeckius M, Papalexi E, Mimitou EP, Jain J, Srivastava A, Stuart T, Fleming LM, Yeung B, Rogers AJ, McElrath JM, Blish CA, Gottardo R, Smibert P, Satija R. Hao Y, et al. Among authors: stoeckius m. Cell. 2021 Jun 24;184(13):3573-3587.e29. doi: 10.1016/j.cell.2021.04.048. Epub 2021 May 31. Cell. 2021. PMID: 34062119 Free PMC article.
Clonal lineage tracing reveals shared origin of conventional and plasmacytoid dendritic cells.
Feng J, Pucella JN, Jang G, Alcántara-Hernández M, Upadhaya S, Adams NM, Khodadadi-Jamayran A, Lau CM, Stoeckius M, Hao S, Smibert P, Tsirigos A, Idoyaga J, Reizis B. Feng J, et al. Among authors: stoeckius m. Immunity. 2022 Mar 8;55(3):405-422.e11. doi: 10.1016/j.immuni.2022.01.016. Epub 2022 Feb 17. Immunity. 2022. PMID: 35180378 Free PMC article.
Single-cell stabilization method identifies gonadotrope transcriptional dynamics and pituitary cell type heterogeneity.
Ruf-Zamojski F, Ge Y, Nair V, Zamojski M, Pincas H, Toufaily C, Tome-Garcia J, Stoeckius M, Stephenson W, Smith GR, Bernard DJ, Tsankova NM, Hartmann BM, Fribourg M, Smibert P, Swerdlow H, Turgeon JL, Sealfon SC. Ruf-Zamojski F, et al. Among authors: stoeckius m. Nucleic Acids Res. 2018 Nov 30;46(21):11370-11380. doi: 10.1093/nar/gky991. Nucleic Acids Res. 2018. PMID: 30357357 Free PMC article.
Tracing tumorigenesis in a solid tumor model at single-cell resolution.
Praktiknjo SD, Obermayer B, Zhu Q, Fang L, Liu H, Quinn H, Stoeckius M, Kocks C, Birchmeier W, Rajewsky N. Praktiknjo SD, et al. Among authors: stoeckius m. Nat Commun. 2020 Feb 20;11(1):991. doi: 10.1038/s41467-020-14777-0. Nat Commun. 2020. PMID: 32080185 Free PMC article.
24 results