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Discordant bioinformatic predictions of antimicrobial resistance from whole-genome sequencing data of bacterial isolates: an inter-laboratory study.
Doyle RM, O'Sullivan DM, Aller SD, Bruchmann S, Clark T, Coello Pelegrin A, Cormican M, Diez Benavente E, Ellington MJ, McGrath E, Motro Y, Phuong Thuy Nguyen T, Phelan J, Shaw LP, Stabler RA, van Belkum A, van Dorp L, Woodford N, Moran-Gilad J, Huggett JF, Harris KA. Doyle RM, et al. Among authors: phelan j. Microb Genom. 2020 Feb;6(2):e000335. doi: 10.1099/mgen.0.000335. Epub 2020 Feb 12. Microb Genom. 2020. PMID: 32048983 Free PMC article.
Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages.
Phelan JE, Coll F, Bergval I, Anthony RM, Warren R, Sampson SL, Gey van Pittius NC, Glynn JR, Crampin AC, Alves A, Bessa TB, Campino S, Dheda K, Grandjean L, Hasan R, Hasan Z, Miranda A, Moore D, Panaiotov S, Perdigao J, Portugal I, Sheen P, de Oliveira Sousa E, Streicher EM, van Helden PD, Viveiros M, Hibberd ML, Pain A, McNerney R, Clark TG. Phelan JE, et al. BMC Genomics. 2016 Feb 29;17:151. doi: 10.1186/s12864-016-2467-y. BMC Genomics. 2016. PMID: 26923687 Free PMC article.
Population-based analysis of ocular Chlamydia trachomatis in trachoma-endemic West African communities identifies genomic markers of disease severity.
Last AR, Pickering H, Roberts CH, Coll F, Phelan J, Burr SE, Cassama E, Nabicassa M, Seth-Smith HMB, Hadfield J, Cutcliffe LT, Clarke IN, Mabey DCW, Bailey RL, Clark TG, Thomson NR, Holland MJ. Last AR, et al. Among authors: phelan j. Genome Med. 2018 Feb 26;10(1):15. doi: 10.1186/s13073-018-0521-x. Genome Med. 2018. PMID: 29482619 Free PMC article.
Whole-genome sequencing resolves a polyclonal outbreak by extended-spectrum beta-lactam and carbapenem-resistant Klebsiella pneumoniae in a Portuguese tertiary-care hospital.
Perdigão J, Modesto A, Pereira AL, Neto O, Matos V, Godinho A, Phelan J, Charleston J, Spadar A, de Sessions PF, Hibberd M, Campino S, Costa A, Fernandes F, Ferreira F, Correia AB, Gonçalves L, Clark TG, Duarte A. Perdigão J, et al. Among authors: phelan j. Microb Genom. 2019 Sep;7(6):000349. doi: 10.1099/mgen.0.000349. Microb Genom. 2019. PMID: 32234124 Free PMC article.
821 results