Wu Z - Search Results

1

Correction Schemes for Absolute Binding Free Energies Involving Lipid Bilayers.

Wu Z, Biggin PC. Wu Z, et al. J Chem Theory Comput. 2022 Apr 12;18(4):2657-2672. doi: 10.1021/acs.jctc.1c01251. Epub 2022 Mar 22. J Chem Theory Comput. 2022. PMID: 35315270 Free PMC article.

2

Proton Control of Transitions in an Amino Acid Transporter.

Wu Z, Alibay I, Newstead S, Biggin PC. Wu Z, et al. Biophys J. 2019 Oct 1;117(7):1342-1351. doi: 10.1016/j.bpj.2019.07.056. Epub 2019 Aug 26. Biophys J. 2019. PMID: 31500802 Free PMC article.

3

The KDEL trafficking receptor exploits pH to tune the strength of an unusual short hydrogen bond.

Wu Z, Newstead S, Biggin PC. Wu Z, et al. Sci Rep. 2020 Oct 9;10(1):16903. doi: 10.1038/s41598-020-73906-3. Sci Rep. 2020. PMID: 33037300 Free PMC article.

4

Structural basis of antifolate recognition and transport by PCFT.

Parker JL, Deme JC, Kuteyi G, Wu Z, Huo J, Goldman ID, Owens RJ, Biggin PC, Lea SM, Newstead S. Parker JL, et al. Among authors: wu z. Nature. 2021 Jul;595(7865):130-134. doi: 10.1038/s41586-021-03579-z. Epub 2021 May 26. Nature. 2021. PMID: 34040256 Free PMC article.

5

A signal capture and proofreading mechanism for the KDEL-receptor explains selectivity and dynamic range in ER retrieval.

Gerondopoulos A, Bräuer P, Sobajima T, Wu Z, Parker JL, Biggin PC, Barr FA, Newstead S. Gerondopoulos A, et al. Among authors: wu z. Elife. 2021 Jun 17;10:e68380. doi: 10.7554/eLife.68380. Elife. 2021. PMID: 34137369 Free PMC article.

6

Cryo-EM structure of PepT2 reveals structural basis for proton-coupled peptide and prodrug transport in mammals.

Parker JL, Deme JC, Wu Z, Kuteyi G, Huo J, Owens RJ, Biggin PC, Lea SM, Newstead S. Parker JL, et al. Among authors: wu z. Sci Adv. 2021 Aug 25;7(35):eabh3355. doi: 10.1126/sciadv.abh3355. Print 2021 Aug. Sci Adv. 2021. PMID: 34433568 Free PMC article.

7

Molecular basis for pH sensing in the KDEL trafficking receptor.

Wu Z, Smith K, Gerondopoulos A, Sobajima T, Parker JL, Barr FA, Newstead S, Biggin PC. Wu Z, et al. Structure. 2024 Jul 11;32(7):866-877.e4. doi: 10.1016/j.str.2024.03.013. Epub 2024 Apr 15. Structure. 2024. PMID: 38626766 Free article.

8

Evaluation of Machine Learning/Molecular Mechanics End-State Corrections with Mechanical Embedding to Calculate Relative Protein-Ligand Binding Free Energies.

Karwounopoulos J, Bieniek M, Wu Z, Baskerville AL, König G, Cossins BP, Wood GPF. Karwounopoulos J, et al. Among authors: wu z. J Chem Theory Comput. 2025 Jan 3. doi: 10.1021/acs.jctc.4c01427. Online ahead of print. J Chem Theory Comput. 2025. PMID: 39753520

9

Insights and Challenges in Correcting Force Field Based Solvation Free Energies Using a Neural Network Potential.

Karwounopoulos J, Wu Z, Tkaczyk S, Wang S, Baskerville A, Ranasinghe K, Langer T, Wood GPF, Wieder M, Boresch S. Karwounopoulos J, et al. Among authors: wu z. J Phys Chem B. 2024 Jul 18;128(28):6693-6703. doi: 10.1021/acs.jpcb.4c01417. Epub 2024 Jul 8. J Phys Chem B. 2024. PMID: 38976601 Free PMC article.

10

Augmenting efficient real-time surgical instrument segmentation in video with point tracking and Segment Anything.

Wu Z, Schmidt A, Kazanzides P, Salcudean SE. Wu Z, et al. Healthc Technol Lett. 2024 Dec 30;12(1):e12111. doi: 10.1049/htl2.12111. eCollection 2025 Jan-Dec. Healthc Technol Lett. 2024. PMID: 39816705 Free PMC article.

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