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Page 1
Unsupervised learning approaches to characterizing heterogeneous samples using X-ray single-particle imaging.
Zhuang Y, Awel S, Barty A, Bean R, Bielecki J, Bergemann M, Daurer BJ, Ekeberg T, Estillore AD, Fangohr H, Giewekemeyer K, Hunter MS, Karnevskiy M, Kirian RA, Kirkwood H, Kim Y, Koliyadu J, Lange H, Letrun R, Lübke J, Mall A, Michelat T, Morgan AJ, Roth N, Samanta AK, Sato T, Shen Z, Sikorski M, Schulz F, Spence JCH, Vagovic P, Wollweber T, Worbs L, Xavier PL, Yefanov O, Maia FRNC, Horke DA, Küpper J, Loh ND, Mancuso AP, Chapman HN, Ayyer K. Zhuang Y, et al. Among authors: kim y. IUCrJ. 2022 Jan 11;9(Pt 2):204-214. doi: 10.1107/S2052252521012707. eCollection 2022 Mar 1. IUCrJ. 2022. PMID: 35371510 Free PMC article.
Coherent diffraction of single Rice Dwarf virus particles using hard X-rays at the Linac Coherent Light Source.
Munke A, Andreasson J, Aquila A, Awel S, Ayyer K, Barty A, Bean RJ, Berntsen P, Bielecki J, Boutet S, Bucher M, Chapman HN, Daurer BJ, DeMirci H, Elser V, Fromme P, Hajdu J, Hantke MF, Higashiura A, Hogue BG, Hosseinizadeh A, Kim Y, Kirian RA, Reddy HK, Lan TY, Larsson DS, Liu H, Loh ND, Maia FR, Mancuso AP, Mühlig K, Nakagawa A, Nam D, Nelson G, Nettelblad C, Okamoto K, Ourmazd A, Rose M, van der Schot G, Schwander P, Seibert MM, Sellberg JA, Sierra RG, Song C, Svenda M, Timneanu N, Vartanyants IA, Westphal D, Wiedorn MO, Williams GJ, Xavier PL, Yoon CH, Zook J. Munke A, et al. Among authors: kim y. Sci Data. 2016 Aug 1;3:160064. doi: 10.1038/sdata.2016.64. Sci Data. 2016. PMID: 27478984 Free PMC article.
Coherent soft X-ray diffraction imaging of coliphage PR772 at the Linac coherent light source.
Reddy HKN, Yoon CH, Aquila A, Awel S, Ayyer K, Barty A, Berntsen P, Bielecki J, Bobkov S, Bucher M, Carini GA, Carron S, Chapman H, Daurer B, DeMirci H, Ekeberg T, Fromme P, Hajdu J, Hanke MF, Hart P, Hogue BG, Hosseinizadeh A, Kim Y, Kirian RA, Kurta RP, Larsson DSD, Duane Loh N, Maia FRNC, Mancuso AP, Mühlig K, Munke A, Nam D, Nettelblad C, Ourmazd A, Rose M, Schwander P, Seibert M, Sellberg JA, Song C, Spence JCH, Svenda M, Van der Schot G, Vartanyants IA, Williams GJ, Xavier PL. Reddy HKN, et al. Among authors: kim y. Sci Data. 2017 Jun 27;4:170079. doi: 10.1038/sdata.2017.79. Sci Data. 2017. PMID: 28654088 Free PMC article.
Megahertz data collection from protein microcrystals at an X-ray free-electron laser.
Grünbein ML, Bielecki J, Gorel A, Stricker M, Bean R, Cammarata M, Dörner K, Fröhlich L, Hartmann E, Hauf S, Hilpert M, Kim Y, Kloos M, Letrun R, Messerschmidt M, Mills G, Nass Kovacs G, Ramilli M, Roome CM, Sato T, Scholz M, Sliwa M, Sztuk-Dambietz J, Weik M, Weinhausen B, Al-Qudami N, Boukhelef D, Brockhauser S, Ehsan W, Emons M, Esenov S, Fangohr H, Kaukher A, Kluyver T, Lederer M, Maia L, Manetti M, Michelat T, Münnich A, Pallas F, Palmer G, Previtali G, Raab N, Silenzi A, Szuba J, Venkatesan S, Wrona K, Zhu J, Doak RB, Shoeman RL, Foucar L, Colletier JP, Mancuso AP, Barends TRM, Stan CA, Schlichting I. Grünbein ML, et al. Among authors: kim y. Nat Commun. 2018 Aug 28;9(1):3487. doi: 10.1038/s41467-018-05953-4. Nat Commun. 2018. PMID: 30154468 Free PMC article.
Megahertz serial crystallography.
Wiedorn MO, Oberthür D, Bean R, Schubert R, Werner N, Abbey B, Aepfelbacher M, Adriano L, Allahgholi A, Al-Qudami N, Andreasson J, Aplin S, Awel S, Ayyer K, Bajt S, Barák I, Bari S, Bielecki J, Botha S, Boukhelef D, Brehm W, Brockhauser S, Cheviakov I, Coleman MA, Cruz-Mazo F, Danilevski C, Darmanin C, Doak RB, Domaracky M, Dörner K, Du Y, Fangohr H, Fleckenstein H, Frank M, Fromme P, Gañán-Calvo AM, Gevorkov Y, Giewekemeyer K, Ginn HM, Graafsma H, Graceffa R, Greiffenberg D, Gumprecht L, Göttlicher P, Hajdu J, Hauf S, Heymann M, Holmes S, Horke DA, Hunter MS, Imlau S, Kaukher A, Kim Y, Klyuev A, Knoška J, Kobe B, Kuhn M, Kupitz C, Küpper J, Lahey-Rudolph JM, Laurus T, Le Cong K, Letrun R, Xavier PL, Maia L, Maia FRNC, Mariani V, Messerschmidt M, Metz M, Mezza D, Michelat T, Mills G, Monteiro DCF, Morgan A, Mühlig K, Munke A, Münnich A, Nette J, Nugent KA, Nuguid T, Orville AM, Pandey S, Pena G, Villanueva-Perez P, Poehlsen J, Previtali G, Redecke L, Riekehr WM, Rohde H, Round A, Safenreiter T, Sarrou I, Sato T, Schmidt M, Schmitt B, Schönherr R, Schulz J, Sellberg JA, Seibert MM, Seuring C, Shelby ML, Shoeman RL, Sikorski M, Silenzi A, Stan CA, Shi X, Stern S, Sztuk-Dambie… See abstract for full author list ➔ Wiedorn MO, et al. Among authors: kim y. Nat Commun. 2018 Oct 2;9(1):4025. doi: 10.1038/s41467-018-06156-7. Nat Commun. 2018. PMID: 30279492 Free PMC article.
Initial observations of the femtosecond timing jitter at the European XFEL.
Kirkwood HJ, Letrun R, Tanikawa T, Liu J, Nakatsutsumi M, Emons M, Jezynski T, Palmer G, Lederer M, Bean R, Buck J, Di Dio Cafisio S, Graceffa R, Grünert J, Göde S, Höppner H, Kim Y, Konopkova Z, Mills G, Makita M, Pelka A, Preston TR, Sikorski M, Takem CMS, Giewekemeyer K, Chollet M, Vagovic P, Chapman HN, Mancuso AP, Sato T. Kirkwood HJ, et al. Among authors: kim y. Opt Lett. 2019 Apr 1;44(7):1650-1653. doi: 10.1364/OL.44.001650. Opt Lett. 2019. PMID: 30933113
MHz data collection of a microcrystalline mixture of different jack bean proteins.
Grünbein ML, Bielecki J, Gorel A, Stricker M, Bean R, Cammarata M, Dörner K, Fröhlich L, Hartmann E, Hauf S, Hilpert M, Kim Y, Kloos M, Letrun R, Messerschmidt M, Mills G, Nass Kovacs G, Ramilli M, Roome CM, Sato T, Scholz M, Sliwa M, Sztuk-Dambietz J, Weik M, Weinhausen B, Al-Qudami N, Boukhelef D, Brockhauser S, Ehsan W, Emons M, Esenov S, Fangohr H, Kaukher A, Kluyver T, Lederer M, Maia L, Manetti M, Michelat T, Münnich A, Pallas F, Palmer G, Previtali G, Raab N, Silenzi A, Szuba J, Venkatesan S, Wrona K, Zhu J, Doak RB, Shoeman RL, Foucar L, Colletier JP, Mancuso AP, Barends TRM, Stan CA, Schlichting I. Grünbein ML, et al. Among authors: kim y. Sci Data. 2019 Apr 3;6(1):18. doi: 10.1038/s41597-019-0010-0. Sci Data. 2019. PMID: 30944333 Free PMC article.
The Single Particles, Clusters and Biomolecules and Serial Femtosecond Crystallography instrument of the European XFEL: initial installation.
Mancuso AP, Aquila A, Batchelor L, Bean RJ, Bielecki J, Borchers G, Doerner K, Giewekemeyer K, Graceffa R, Kelsey OD, Kim Y, Kirkwood HJ, Legrand A, Letrun R, Manning B, Lopez Morillo L, Messerschmidt M, Mills G, Raabe S, Reimers N, Round A, Sato T, Schulz J, Signe Takem C, Sikorski M, Stern S, Thute P, Vagovič P, Weinhausen B, Tschentscher T. Mancuso AP, et al. Among authors: kim y. J Synchrotron Radiat. 2019 May 1;26(Pt 3):660-676. doi: 10.1107/S1600577519003308. Epub 2019 Apr 12. J Synchrotron Radiat. 2019. PMID: 31074429 Free PMC article.
Membrane protein megahertz crystallography at the European XFEL.
Gisriel C, Coe J, Letrun R, Yefanov OM, Luna-Chavez C, Stander NE, Lisova S, Mariani V, Kuhn M, Aplin S, Grant TD, Dörner K, Sato T, Echelmeier A, Cruz Villarreal J, Hunter MS, Wiedorn MO, Knoska J, Mazalova V, Roy-Chowdhury S, Yang JH, Jones A, Bean R, Bielecki J, Kim Y, Mills G, Weinhausen B, Meza JD, Al-Qudami N, Bajt S, Brehm G, Botha S, Boukhelef D, Brockhauser S, Bruce BD, Coleman MA, Danilevski C, Discianno E, Dobson Z, Fangohr H, Martin-Garcia JM, Gevorkov Y, Hauf S, Hosseinizadeh A, Januschek F, Ketawala GK, Kupitz C, Maia L, Manetti M, Messerschmidt M, Michelat T, Mondal J, Ourmazd A, Previtali G, Sarrou I, Schön S, Schwander P, Shelby ML, Silenzi A, Sztuk-Dambietz J, Szuba J, Turcato M, White TA, Wrona K, Xu C, Abdellatif MH, Zook JD, Spence JCH, Chapman HN, Barty A, Kirian RA, Frank M, Ros A, Schmidt M, Fromme R, Mancuso AP, Fromme P, Zatsepin NA. Gisriel C, et al. Among authors: kim y. Nat Commun. 2019 Nov 4;10(1):5021. doi: 10.1038/s41467-019-12955-3. Nat Commun. 2019. PMID: 31685819 Free PMC article.
Time-resolved serial femtosecond crystallography at the European XFEL.
Pandey S, Bean R, Sato T, Poudyal I, Bielecki J, Cruz Villarreal J, Yefanov O, Mariani V, White TA, Kupitz C, Hunter M, Abdellatif MH, Bajt S, Bondar V, Echelmeier A, Doppler D, Emons M, Frank M, Fromme R, Gevorkov Y, Giovanetti G, Jiang M, Kim D, Kim Y, Kirkwood H, Klimovskaia A, Knoska J, Koua FHM, Letrun R, Lisova S, Maia L, Mazalova V, Meza D, Michelat T, Ourmazd A, Palmer G, Ramilli M, Schubert R, Schwander P, Silenzi A, Sztuk-Dambietz J, Tolstikova A, Chapman HN, Ros A, Barty A, Fromme P, Mancuso AP, Schmidt M. Pandey S, et al. Among authors: kim d, kim y. Nat Methods. 2020 Jan;17(1):73-78. doi: 10.1038/s41592-019-0628-z. Epub 2019 Nov 18. Nat Methods. 2020. PMID: 31740816 Free PMC article.
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