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ANANASTRA: annotation and enrichment analysis of allele-specific transcription factor binding at SNPs.
Nucleic Acids Res. 2022 Jul 5;50(W1):W51-W56. doi: 10.1093/nar/gkac262.
Nucleic Acids Res. 2022.
PMID: 35446421
Free PMC article.
HOCOMOCO in 2024: a rebuild of the curated collection of binding models for human and mouse transcription factors.
Vorontsov IE, Eliseeva IA, Zinkevich A, Nikonov M, Abramov S, Boytsov A, Kamenets V, Kasianova A, Kolmykov S, Yevshin IS, Favorov A, Medvedeva YA, Jolma A, Kolpakov F, Makeev VJ, Kulakovskiy IV.
Vorontsov IE, et al.
Nucleic Acids Res. 2024 Jan 5;52(D1):D154-D163. doi: 10.1093/nar/gkad1077.
Nucleic Acids Res. 2024.
PMID: 37971293
Free PMC article.
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Origin of CMS-PET1 cytotype in cultivated sunflower: A new insight.
Azarin K, Usatov A, Kasianova A, Makarenko M, Gavrilova V.
Azarin K, et al.
Gene. 2023 Dec 20;888:147801. doi: 10.1016/j.gene.2023.147801. Epub 2023 Sep 14.
Gene. 2023.
PMID: 37714278
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Trans2express - de novo transcriptome assembly pipeline optimized for gene expression analysis.
Kasianova AM, Penin AA, Schelkunov MI, Kasianov AS, Logacheva MD, Klepikova AV.
Kasianova AM, et al.
Plant Methods. 2024 Aug 17;20(1):128. doi: 10.1186/s13007-024-01255-7.
Plant Methods. 2024.
PMID: 39152473
Free PMC article.
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