Huang SY - Search Results

1

Efficient 3D conformer generation of cyclic peptides formed by a disulfide bond.

Tao H, Wu Q, Zhao X, Lin P, Huang SY. Tao H, et al. Among authors: huang sy. J Cheminform. 2022 May 3;14(1):26. doi: 10.1186/s13321-022-00605-8. J Cheminform. 2022. PMID: 35505401 Free PMC article.

2

Efficient conformational ensemble generation of protein-bound peptides.

Yan Y, Zhang D, Huang SY. Yan Y, et al. Among authors: huang sy. J Cheminform. 2017 Nov 22;9(1):59. doi: 10.1186/s13321-017-0246-7. J Cheminform. 2017. PMID: 29168051 Free PMC article.

3

Hierarchical Flexible Peptide Docking by Conformer Generation and Ensemble Docking of Peptides.

Zhou P, Li B, Yan Y, Jin B, Wang L, Huang SY. Zhou P, et al. Among authors: huang sy. J Chem Inf Model. 2018 Jun 25;58(6):1292-1302. doi: 10.1021/acs.jcim.8b00142. Epub 2018 May 21. J Chem Inf Model. 2018. PMID: 29738247

4

HSYMDOCK: a docking web server for predicting the structure of protein homo-oligomers with Cn or Dn symmetry.

Yan Y, Tao H, Huang SY. Yan Y, et al. Among authors: huang sy. Nucleic Acids Res. 2018 Jul 2;46(W1):W423-W431. doi: 10.1093/nar/gky398. Nucleic Acids Res. 2018. PMID: 29846641 Free PMC article.

5

PepBDB: a comprehensive structural database of biological peptide-protein interactions.

Wen Z, He J, Tao H, Huang SY. Wen Z, et al. Among authors: huang sy. Bioinformatics. 2019 Jan 1;35(1):175-177. doi: 10.1093/bioinformatics/bty579. Bioinformatics. 2019. PMID: 29982280

6

Protein-ensemble-RNA docking by efficient consideration of protein flexibility through homology models.

He J, Tao H, Huang SY. He J, et al. Among authors: huang sy. Bioinformatics. 2019 Dec 1;35(23):4994-5002. doi: 10.1093/bioinformatics/btz388. Bioinformatics. 2019. PMID: 31086984

7

HNADOCK: a nucleic acid docking server for modeling RNA/DNA-RNA/DNA 3D complex structures.

He J, Wang J, Tao H, Xiao Y, Huang SY. He J, et al. Among authors: huang sy. Nucleic Acids Res. 2019 Jul 2;47(W1):W35-W42. doi: 10.1093/nar/gkz412. Nucleic Acids Res. 2019. PMID: 31114906 Free PMC article.

8

Dynamics and Mechanisms in the Recruitment and Transference of Histone Chaperone CIA/ASF1.

Zhang Y, Tao H, Huang SY. Zhang Y, et al. Among authors: huang sy. Int J Mol Sci. 2019 Jul 6;20(13):3325. doi: 10.3390/ijms20133325. Int J Mol Sci. 2019. PMID: 31284555 Free PMC article.

9

Challenges and opportunities of automated protein-protein docking: HDOCK server vs human predictions in CAPRI Rounds 38-46.

Yan Y, He J, Feng Y, Lin P, Tao H, Huang SY. Yan Y, et al. Among authors: huang sy. Proteins. 2020 Aug;88(8):1055-1069. doi: 10.1002/prot.25874. Epub 2020 Feb 7. Proteins. 2020. PMID: 31994779

10

Improving Protein-Peptide Docking Results via Pose-Clustering and Rescoring with a Combined Knowledge-Based and MM-GBSA Scoring Function.

Tao H, Zhang Y, Huang SY. Tao H, et al. Among authors: huang sy. J Chem Inf Model. 2020 Apr 27;60(4):2377-2387. doi: 10.1021/acs.jcim.0c00058. Epub 2020 Apr 16. J Chem Inf Model. 2020. PMID: 32267149

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