Gabriel W - Search Results

1

Prosit-TMT: Deep Learning Boosts Identification of TMT-Labeled Peptides.

Gabriel W, The M, Zolg DP, Bayer FP, Shouman O, Lautenbacher L, Schnatbaum K, Zerweck J, Knaute T, Delanghe B, Huhmer A, Wenschuh H, Reimer U, Médard G, Kuster B, Wilhelm M. Gabriel W, et al. Anal Chem. 2022 May 24;94(20):7181-7190. doi: 10.1021/acs.analchem.1c05435. Epub 2022 May 12. Anal Chem. 2022. PMID: 35549156

2

Linking post-translational modifications and protein turnover by site-resolved protein turnover profiling.

Zecha J, Gabriel W, Spallek R, Chang YC, Mergner J, Wilhelm M, Bassermann F, Kuster B. Zecha J, et al. Among authors: gabriel w. Nat Commun. 2022 Jan 10;13(1):165. doi: 10.1038/s41467-021-27639-0. Nat Commun. 2022. PMID: 35013197 Free PMC article.

3

Prosit Transformer: A transformer for Prediction of MS2 Spectrum Intensities.

Ekvall M, Truong P, Gabriel W, Wilhelm M, Käll L. Ekvall M, et al. Among authors: gabriel w. J Proteome Res. 2022 May 6;21(5):1359-1364. doi: 10.1021/acs.jproteome.1c00870. Epub 2022 Apr 12. J Proteome Res. 2022. PMID: 35413196 Free PMC article.

4

Predicting fragment intensities and retention time of iTRAQ- and TMTPro-labeled peptides with Prosit-TMT.

Gabriel W, Giurcoiu V, Lautenbacher L, Wilhelm M. Gabriel W, et al. Proteomics. 2022 Oct;22(19-20):e2100257. doi: 10.1002/pmic.202100257. Epub 2022 May 24. Proteomics. 2022. PMID: 35578405

5

Real-Time Spectral Library Matching for Sample Multiplexed Quantitative Proteomics.

McGann CD, Barshop WD, Canterbury JD, Lin C, Gabriel W, Huang J, Bergen D, Zabrouskov V, Melani RD, Wilhelm M, McAlister GC, Schweppe DK. McGann CD, et al. Among authors: gabriel w. J Proteome Res. 2023 Sep 1;22(9):2836-2846. doi: 10.1021/acs.jproteome.3c00085. Epub 2023 Aug 9. J Proteome Res. 2023. PMID: 37557900 Free PMC article.

6

Oktoberfest: Open-source spectral library generation and rescoring pipeline based on Prosit.

Picciani M, Gabriel W, Giurcoiu VG, Shouman O, Hamood F, Lautenbacher L, Jensen CB, Müller J, Kalhor M, Soleymaniniya A, Kuster B, The M, Wilhelm M. Picciani M, et al. Among authors: gabriel w. Proteomics. 2024 Apr;24(8):e2300112. doi: 10.1002/pmic.202300112. Epub 2023 Sep 6. Proteomics. 2024. PMID: 37672792

7

Deep Learning-Assisted Analysis of Immunopeptidomics Data.

Gabriel W, Picciani M, The M, Wilhelm M. Gabriel W, et al. Methods Mol Biol. 2024;2758:457-483. doi: 10.1007/978-1-0716-3646-6_25. Methods Mol Biol. 2024. PMID: 38549030

8

Fragment ion intensity prediction improves the identification rate of non-tryptic peptides in timsTOF.

Adams C, Gabriel W, Laukens K, Picciani M, Wilhelm M, Bittremieux W, Boonen K. Adams C, et al. Among authors: gabriel w. Nat Commun. 2024 May 10;15(1):3956. doi: 10.1038/s41467-024-48322-0. Nat Commun. 2024. PMID: 38730277 Free PMC article.

9

Koina: Democratizing machine learning for proteomics research.

Lautenbacher L, Yang KL, Kockmann T, Panse C, Chambers M, Kahl E, Yu F, Gabriel W, Bold D, Schmidt T, Li K, MacLean B, Nesvizhskii AI, Wilhelm M. Lautenbacher L, et al. Among authors: gabriel w. bioRxiv [Preprint]. 2024 Jun 3:2024.06.01.596953. doi: 10.1101/2024.06.01.596953. bioRxiv. 2024. PMID: 38895358 Free PMC article. Preprint.

10

AI-Assisted Processing Pipeline to Boost Protein Isoform Detection.

The M, Picciani M, Jensen C, Gabriel W, Kuster B, Wilhelm M. The M, et al. Among authors: gabriel w. Methods Mol Biol. 2024;2836:157-181. doi: 10.1007/978-1-0716-4007-4_10. Methods Mol Biol. 2024. PMID: 38995541

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