Rubio A - Search Results

1

Genome editing in animals with minimal PAM CRISPR-Cas9 enzymes.

Vicencio J, Sánchez-Bolaños C, Moreno-Sánchez I, Brena D, Vejnar CE, Kukhtar D, Ruiz-López M, Cots-Ponjoan M, Rubio A, Melero NR, Crespo-Cuadrado J, Carolis C, Pérez-Pulido AJ, Giráldez AJ, Kleinstiver BP, Cerón J, Moreno-Mateos MA. Vicencio J, et al. Among authors: rubio a. Nat Commun. 2022 May 12;13(1):2601. doi: 10.1038/s41467-022-30228-4. Nat Commun. 2022. PMID: 35552388 Free PMC article.

2

AnABlast: Re-searching for Protein-Coding Sequences in Genomic Regions.

Rubio A, Casimiro-Soriguer CS, Mier P, Andrade-Navarro MA, Garzón A, Jimenez J, Pérez-Pulido AJ. Rubio A, et al. Methods Mol Biol. 2019;1962:207-214. doi: 10.1007/978-1-4939-9173-0_12. Methods Mol Biol. 2019. PMID: 31020562

3

Pangenome of Acinetobacter baumannii uncovers two groups of genomes, one of them with genes involved in CRISPR/Cas defence systems associated with the absence of plasmids and exclusive genes for biofilm formation.

Mangas EL, Rubio A, Álvarez-Marín R, Labrador-Herrera G, Pachón J, Pachón-Ibáñez ME, Divina F, Pérez-Pulido AJ. Mangas EL, et al. Among authors: rubio a. Microb Genom. 2019 Nov;5(11):e000309. doi: 10.1099/mgen.0.000309. Microb Genom. 2019. PMID: 31626589 Free PMC article.

4

Ancient evolutionary signals of protein-coding sequences allow the discovery of new genes in the Drosophila melanogaster genome.

Casimiro-Soriguer CS, Rubio A, Jimenez J, Pérez-Pulido AJ. Casimiro-Soriguer CS, et al. Among authors: rubio a. BMC Genomics. 2020 Mar 5;21(1):210. doi: 10.1186/s12864-020-6632-y. BMC Genomics. 2020. PMID: 32138644 Free PMC article.

5

CRISPR sequences are sometimes erroneously translated and can contaminate public databases with spurious proteins containing spaced repeats.

Rubio A, Mier P, Andrade-Navarro MA, Garzón A, Jiménez J, Pérez-Pulido AJ. Rubio A, et al. Database (Oxford). 2020 Jan 1;2020:baaa088. doi: 10.1093/database/baaa088. Database (Oxford). 2020. PMID: 33206958 Free PMC article.

6

Protein-Coding Genes of Helicobacter pylori Predominantly Present Purifying Selection though Many Membrane Proteins Suffer from Selection Pressure: A Proposal to Analyze Bacterial Pangenomes.

Rubio A, Pérez-Pulido AJ. Rubio A, et al. Genes (Basel). 2021 Mar 6;12(3):377. doi: 10.3390/genes12030377. Genes (Basel). 2021. PMID: 33800844 Free PMC article.

7

L-Arginine Ameliorates Defective Autophagy in GM2 Gangliosidoses by mTOR Modulation.

Castejón-Vega B, Rubio A, Pérez-Pulido AJ, Quiles JL, Lane JD, Fernández-Domínguez B, Cachón-González MB, Martín-Ruiz C, Sanz A, Cox TM, Alcocer-Gómez E, Cordero MD. Castejón-Vega B, et al. Among authors: rubio a. Cells. 2021 Nov 11;10(11):3122. doi: 10.3390/cells10113122. Cells. 2021. PMID: 34831346 Free PMC article.

8

Assessment of selection pressure exerted on genes from complete pangenomes helps to improve the accuracy in the prediction of new genes.

Rubio A, Jimenez J, Pérez-Pulido AJ. Rubio A, et al. Brief Bioinform. 2022 Mar 10;23(2):bbac010. doi: 10.1093/bib/bbac010. Brief Bioinform. 2022. PMID: 35108356

9

E-learning strategies from a bioinformatics postgraduate programme to improve student engagement and completion rate.

Garzón A, Rubio A, Pérez-Pulido AJ. Garzón A, et al. Among authors: rubio a. Bioinform Adv. 2022 May 10;2(1):vbac031. doi: 10.1093/bioadv/vbac031. eCollection 2022. Bioinform Adv. 2022. PMID: 36699370 Free PMC article.

10

Analysis of bacterial pangenomes reduces CRISPR dark matter and reveals strong association between membranome and CRISPR-Cas systems.

Rubio A, Sprang M, Garzón A, Moreno-Rodriguez A, Pachón-Ibáñez ME, Pachón J, Andrade-Navarro MA, Pérez-Pulido AJ. Rubio A, et al. Sci Adv. 2023 Mar 24;9(12):eadd8911. doi: 10.1126/sciadv.add8911. Epub 2023 Mar 24. Sci Adv. 2023. PMID: 36961900 Free PMC article.

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