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Within-host diversity improves phylogenetic and transmission reconstruction of SARS-CoV-2 outbreaks.
Ortiz AT, Kendall M, Storey N, Hatcher J, Dunn H, Roy S, Williams R, Williams C, Goldstein RA, Didelot X, Harris K, Breuer J, Grandjean L. Ortiz AT, et al. Among authors: didelot x. bioRxiv [Preprint]. 2022 Jun 7:2022.06.07.495142. doi: 10.1101/2022.06.07.495142. bioRxiv. 2022. Update in: Elife. 2023 Sep 21;12:e84384. doi: 10.7554/eLife.84384 PMID: 35702156 Free PMC article. Updated. Preprint.
Genomic signatures of pre-resistance in Mycobacterium tuberculosis.
Torres Ortiz A, Coronel J, Vidal JR, Bonilla C, Moore DAJ, Gilman RH, Balloux F, Kon OM, Didelot X, Grandjean L. Torres Ortiz A, et al. Among authors: didelot x. Nat Commun. 2021 Dec 15;12(1):7312. doi: 10.1038/s41467-021-27616-7. Nat Commun. 2021. PMID: 34911948 Free PMC article.
Drivers of epidemic dynamics in real time from daily digital COVID-19 measurements.
Kendall M, Ferretti L, Wymant C, Tsallis D, Petrie J, Di Francia A, Di Lauro F, Abeler-Dörner L, Manley H, Panovska-Griffiths J, Ledda A, Didelot X, Fraser C. Kendall M, et al. Among authors: didelot x. Science. 2024 Aug 16;385(6710):eadm8103. doi: 10.1126/science.adm8103. Epub 2024 Aug 16. Science. 2024. PMID: 38991048
Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison.
Ratmann O, Hodcroft EB, Pickles M, Cori A, Hall M, Lycett S, Colijn C, Dearlove B, Didelot X, Frost S, Hossain AS, Joy JB, Kendall M, Kühnert D, Leventhal GE, Liang R, Plazzotta G, Poon AF, Rasmussen DA, Stadler T, Volz E, Weis C, Leigh Brown AJ, Fraser C; PANGEA-HIV Consortium. Ratmann O, et al. Among authors: didelot x. Mol Biol Evol. 2017 Jan;34(1):185-203. doi: 10.1093/molbev/msw217. Epub 2016 Oct 7. Mol Biol Evol. 2017. PMID: 28053012 Free PMC article.
182 results