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Within-host diversity improves phylogenetic and transmission reconstruction of SARS-CoV-2 outbreaks.
Ortiz AT, Kendall M, Storey N, Hatcher J, Dunn H, Roy S, Williams R, Williams C, Goldstein RA, Didelot X, Harris K, Breuer J, Grandjean L. Ortiz AT, et al. bioRxiv [Preprint]. 2022 Jun 7:2022.06.07.495142. doi: 10.1101/2022.06.07.495142. bioRxiv. 2022. Update in: Elife. 2023 Sep 21;12:e84384. doi: 10.7554/eLife.84384 PMID: 35702156 Free PMC article. Updated. Preprint.
The Influence of Time on the Sensitivity of SARS-CoV-2 Serological Testing.
Ortiz AT, Torrente FF, Twigg A, Hatcher J, Saso A, Lam T, Johnson M, Wagstaffe H, Dhillon R, Mai AL, Goldblatt D, Still R, Buckland M, Gilmour K, Grandjean L. Ortiz AT, et al. Res Sq [Preprint]. 2022 Feb 17:rs.3.rs-1286644. doi: 10.21203/rs.3.rs-1286644/v1. Res Sq. 2022. Update in: Sci Rep. 2022 Jun 22;12(1):10517. doi: 10.1038/s41598-022-14351-2 PMID: 35194596 Free PMC article. Updated. Preprint.
Socioeconomic and Demographic Risk Factors for SARS-CoV-2 Seropositivity Among Healthcare Workers in a UK Hospital: A Prospective Cohort Study.
Lam T, Saso A, Torres Ortiz A, Hatcher J, Woodman M, Chandran S, Thistlethwayte R, Best T, Johnson M, Wagstaffe H, Mai A, Buckland M, Gilmour K, Goldblatt D, Grandjean L; COVID-19 Staff Testing of Antibody Responses (Co-STARs) Study Team. Lam T, et al. Clin Infect Dis. 2024 Mar 20;78(3):594-602. doi: 10.1093/cid/ciad522. Clin Infect Dis. 2024. PMID: 37647517 Free PMC article.
Emergence of genomic diversity and recurrent mutations in SARS-CoV-2.
van Dorp L, Acman M, Richard D, Shaw LP, Ford CE, Ormond L, Owen CJ, Pang J, Tan CCS, Boshier FAT, Ortiz AT, Balloux F. van Dorp L, et al. Among authors: ortiz at. Infect Genet Evol. 2020 Sep;83:104351. doi: 10.1016/j.meegid.2020.104351. Epub 2020 May 5. Infect Genet Evol. 2020. PMID: 32387564 Free PMC article.