Zhang Z - Search Results

1

RNANetMotif: Identifying sequence-structure RNA network motifs in RNA-protein binding sites.

Ma H, Wen H, Xue Z, Li G, Zhang Z. Ma H, et al. Among authors: zhang z. PLoS Comput Biol. 2022 Jul 12;18(7):e1010293. doi: 10.1371/journal.pcbi.1010293. eCollection 2022 Jul. PLoS Comput Biol. 2022. PMID: 35819951 Free PMC article.

2

Identifying mRNA sequence elements for target recognition by human Argonaute proteins.

Li J, Kim T, Nutiu R, Ray D, Hughes TR, Zhang Z. Li J, et al. Among authors: zhang z. Genome Res. 2014 May;24(5):775-85. doi: 10.1101/gr.162230.113. Epub 2014 Mar 24. Genome Res. 2014. PMID: 24663241 Free PMC article.

3

RNALigands: a database and web server for RNA-ligand interactions.

Sun S, Yang J, Zhang Z. Sun S, et al. Among authors: zhang z. RNA. 2022 Feb;28(2):115-122. doi: 10.1261/rna.078889.121. Epub 2021 Nov 3. RNA. 2022. PMID: 34732566 Free PMC article.

4

Inferring RNA-binding protein target preferences using adversarial domain adaptation.

Liu Y, Li R, Luo J, Zhang Z. Liu Y, et al. Among authors: zhang z. PLoS Comput Biol. 2022 Feb 24;18(2):e1009863. doi: 10.1371/journal.pcbi.1009863. eCollection 2022 Feb. PLoS Comput Biol. 2022. PMID: 35202389 Free PMC article.

5

Enhancing the prediction of transcription factor binding sites by incorporating structural properties and nucleotide covariations.

Gunewardena S, Jeavons P, Zhang Z. Gunewardena S, et al. Among authors: zhang z. J Comput Biol. 2006 May;13(4):929-45. doi: 10.1089/cmb.2006.13.929. J Comput Biol. 2006. PMID: 16761919

6

A hybrid model for robust detection of transcription factor binding sites.

Gunewardena S, Zhang Z. Gunewardena S, et al. Among authors: zhang z. Bioinformatics. 2008 Feb 15;24(4):484-91. doi: 10.1093/bioinformatics/btm629. Epub 2008 Jan 9. Bioinformatics. 2008. PMID: 18184687

7

Learned random-walk kernels and empirical-map kernels for protein sequence classification.

Min R, Bonner A, Li J, Zhang Z. Min R, et al. Among authors: zhang z. J Comput Biol. 2009 Mar;16(3):457-74. doi: 10.1089/cmb.2008.0031. J Comput Biol. 2009. PMID: 19254184

8

Gene expression variability within and between human populations and implications toward disease susceptibility.

Li J, Liu Y, Kim T, Min R, Zhang Z. Li J, et al. Among authors: zhang z. PLoS Comput Biol. 2010 Aug 26;6(8):e1000910. doi: 10.1371/journal.pcbi.1000910. PLoS Comput Biol. 2010. PMID: 20865155 Free PMC article.

9

RIPSeeker: a statistical package for identifying protein-associated transcripts from RIP-seq experiments.

Li Y, Zhao DY, Greenblatt JF, Zhang Z. Li Y, et al. Among authors: zhang z. Nucleic Acids Res. 2013 Apr;41(8):e94. doi: 10.1093/nar/gkt142. Epub 2013 Feb 28. Nucleic Acids Res. 2013. PMID: 23455476 Free PMC article.

10

DNA motif elucidation using belief propagation.

Wong KC, Chan TM, Peng C, Li Y, Zhang Z. Wong KC, et al. Among authors: zhang z. Nucleic Acids Res. 2013 Sep;41(16):e153. doi: 10.1093/nar/gkt574. Epub 2013 Jun 29. Nucleic Acids Res. 2013. PMID: 23814189 Free PMC article.

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