Das S - Search Results

1

Profiling the Site of Protein CoAlation and Coenzyme A Stabilization Interactions.

Tossounian MA, Baczynska M, Dalton W, Newell C, Ma Y, Das S, Semelak JA, Estrin DA, Filonenko V, Trujillo M, Peak-Chew SY, Skehel M, Fraternali F, Orengo C, Gout I. Tossounian MA, et al. Among authors: das s. Antioxidants (Basel). 2022 Jul 14;11(7):1362. doi: 10.3390/antiox11071362. Antioxidants (Basel). 2022. PMID: 35883853 Free PMC article.

2

Protein CoAlation and antioxidant function of coenzyme A in prokaryotic cells.

Tsuchiya Y, Zhyvoloup A, Baković J, Thomas N, Yu BYK, Das S, Orengo C, Newell C, Ward J, Saladino G, Comitani F, Gervasio FL, Malanchuk OM, Khoruzhenko AI, Filonenko V, Peak-Chew SY, Skehel M, Gout I. Tsuchiya Y, et al. Among authors: das s. Biochem J. 2018 Jun 6;475(11):1909-1937. doi: 10.1042/BCJ20180043. Biochem J. 2018. PMID: 29626155 Free PMC article.

3

Protein function annotation using protein domain family resources.

Das S, Orengo CA. Das S, et al. Methods. 2016 Jan 15;93:24-34. doi: 10.1016/j.ymeth.2015.09.029. Epub 2015 Oct 3. Methods. 2016. PMID: 26434392 Free article. Review.

4

Diversity in protein domain superfamilies.

Das S, Dawson NL, Orengo CA. Das S, et al. Curr Opin Genet Dev. 2015 Dec;35:40-9. doi: 10.1016/j.gde.2015.09.005. Epub 2015 Nov 3. Curr Opin Genet Dev. 2015. PMID: 26451979 Free PMC article. Review.

5

Choosing the Best Enzyme Complex Structure Made Easy.

Das S, Orengo C. Das S, et al. Structure. 2018 Apr 3;26(4):528-530. doi: 10.1016/j.str.2018.03.009. Structure. 2018. PMID: 29617649 Free article.

6

An overview of comparative modelling and resources dedicated to large-scale modelling of genome sequences.

Lam SD, Das S, Sillitoe I, Orengo C. Lam SD, et al. Among authors: das s. Acta Crystallogr D Struct Biol. 2017 Aug 1;73(Pt 8):628-640. doi: 10.1107/S2059798317008920. Epub 2017 Jul 28. Acta Crystallogr D Struct Biol. 2017. PMID: 28777078 Free PMC article. Review.

7

CATH functional families predict functional sites in proteins.

Das S, Scholes HM, Sen N, Orengo C. Das S, et al. Bioinformatics. 2021 May 23;37(8):1099-1106. doi: 10.1093/bioinformatics/btaa937. Bioinformatics. 2021. PMID: 33135053 Free PMC article.

8

Functional classification of CATH superfamilies: a domain-based approach for protein function annotation.

Das S, Lee D, Sillitoe I, Dawson NL, Lees JG, Orengo CA. Das S, et al. Bioinformatics. 2015 Nov 1;31(21):3460-7. doi: 10.1093/bioinformatics/btv398. Epub 2015 Jul 2. Bioinformatics. 2015. PMID: 26139634 Free PMC article.

9

Novel Computational Protocols for Functionally Classifying and Characterising Serine Beta-Lactamases.

Lee D, Das S, Dawson NL, Dobrijevic D, Ward J, Orengo C. Lee D, et al. Among authors: das s. PLoS Comput Biol. 2016 Jun 22;12(6):e1004926. doi: 10.1371/journal.pcbi.1004926. eCollection 2016 Jun. PLoS Comput Biol. 2016. PMID: 27332861 Free PMC article.

10

CATH FunFHMMer web server: protein functional annotations using functional family assignments.

Das S, Sillitoe I, Lee D, Lees JG, Dawson NL, Ward J, Orengo CA. Das S, et al. Nucleic Acids Res. 2015 Jul 1;43(W1):W148-53. doi: 10.1093/nar/gkv488. Epub 2015 May 11. Nucleic Acids Res. 2015. PMID: 25964299 Free PMC article.

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