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Potential Opportunities and Challenges of Deploying Next Generation Sequencing and CRISPR-Cas Systems to Support Diagnostics and Surveillance Towards Malaria Control and Elimination in Africa.
Lyimo BM, Popkin-Hall ZR, Giesbrecht DJ, Mandara CI, Madebe RA, Bakari C, Pereus D, Seth MD, Ngamba RM, Mbwambo RB, MacInnis B, Mbwambo D, Garimo I, Chacky F, Aaron S, Lusasi A, Molteni F, Njau R, Cunningham JA, Lazaro S, Mohamed A, Juliano JJ, Bailey JA, Ishengoma DS. Lyimo BM, et al. Among authors: macinnis b. Front Cell Infect Microbiol. 2022 Jul 13;12:757844. doi: 10.3389/fcimb.2022.757844. eCollection 2022. Front Cell Infect Microbiol. 2022. PMID: 35909968 Free PMC article. Review.
Advances and opportunities in malaria population genomics.
Neafsey DE, Taylor AR, MacInnis BL. Neafsey DE, et al. Nat Rev Genet. 2021 Aug;22(8):502-517. doi: 10.1038/s41576-021-00349-5. Epub 2021 Apr 8. Nat Rev Genet. 2021. PMID: 33833443 Free PMC article. Review.
K13-propeller polymorphisms in Plasmodium falciparum parasites from sub-Saharan Africa.
Kamau E, Campino S, Amenga-Etego L, Drury E, Ishengoma D, Johnson K, Mumba D, Kekre M, Yavo W, Mead D, Bouyou-Akotet M, Apinjoh T, Golassa L, Randrianarivelojosia M, Andagalu B, Maiga-Ascofare O, Amambua-Ngwa A, Tindana P, Ghansah A, MacInnis B, Kwiatkowski D, Djimde AA. Kamau E, et al. Among authors: macinnis b. J Infect Dis. 2015 Apr 15;211(8):1352-5. doi: 10.1093/infdis/jiu608. Epub 2014 Nov 2. J Infect Dis. 2015. PMID: 25367300 Free PMC article.
Genetic evidence for imported malaria and local transmission in Richard Toll, Senegal.
Daniels RF, Schaffner SF, Dieye Y, Dieng G, Hainsworth M, Fall FB, Diouf CN, Ndiop M, Cisse M, Gueye AB, Sarr O, Guinot P, Deme AB, Bei AK, Sy M, Thwing J, MacInnis B, Earle D, Guinovart C, Sene D, Hartl DL, Ndiaye D, Steketee RW, Wirth DF, Volkman SK. Daniels RF, et al. Among authors: macinnis b. Malar J. 2020 Aug 3;19(1):276. doi: 10.1186/s12936-020-03346-x. Malar J. 2020. PMID: 32746830 Free PMC article.
Synthetic DNA spike-ins (SDSIs) enable sample tracking and detection of inter-sample contamination in SARS-CoV-2 sequencing workflows.
Lagerborg KA, Normandin E, Bauer MR, Adams G, Figueroa K, Loreth C, Gladden-Young A, Shaw BM, Pearlman LR, Berenzy D, Dewey HB, Kales S, Dobbins ST, Shenoy ES, Hooper D, Pierce VM, Zachary KC, Park DJ, MacInnis BL, Tewhey R, Lemieux JE, Sabeti PC, Reilly SK, Siddle KJ. Lagerborg KA, et al. Among authors: macinnis bl. Nat Microbiol. 2022 Jan;7(1):108-119. doi: 10.1038/s41564-021-01019-2. Epub 2021 Dec 14. Nat Microbiol. 2022. PMID: 34907347 Free PMC article.
Design and implementation of multiplexed amplicon sequencing panels to serve genomic epidemiology of infectious disease: A malaria case study.
LaVerriere E, Schwabl P, Carrasquilla M, Taylor AR, Johnson ZM, Shieh M, Panchal R, Straub TJ, Kuzma R, Watson S, Buckee CO, Andrade CM, Portugal S, Crompton PD, Traore B, Rayner JC, Corredor V, James K, Cox H, Early AM, MacInnis BL, Neafsey DE. LaVerriere E, et al. Among authors: macinnis bl. Mol Ecol Resour. 2022 Aug;22(6):2285-2303. doi: 10.1111/1755-0998.13622. Epub 2022 May 3. Mol Ecol Resour. 2022. PMID: 35437908 Free PMC article.
Genomic investigation of atypical malaria cases in Kanel, northern Senegal.
Sy M, Badiane AS, Deme AB, Gaye A, Ndiaye T, Fall FB, Siddle KJ, Dieye B, Ndiaye YD, Diallo MA, Diongue K, Seck MC, Ndiaye IM, Cissé M, Gueye AB, Sène D, Dieye Y, Souané T, MacInnis B, Volkman SK, Wirth DF, Ndiaye D. Sy M, et al. Among authors: macinnis b. Malar J. 2021 Feb 19;20(1):103. doi: 10.1186/s12936-021-03637-x. Malar J. 2021. PMID: 33608006 Free PMC article.
Effective preparation of Plasmodium vivax field isolates for high-throughput whole genome sequencing.
Auburn S, Marfurt J, Maslen G, Campino S, Ruano Rubio V, Manske M, Machunter B, Kenangalem E, Noviyanti R, Trianty L, Sebayang B, Wirjanata G, Sriprawat K, Alcock D, Macinnis B, Miotto O, Clark TG, Russell B, Anstey NM, Nosten F, Kwiatkowski DP, Price RN. Auburn S, et al. Among authors: macinnis b. PLoS One. 2013;8(1):e53160. doi: 10.1371/journal.pone.0053160. Epub 2013 Jan 4. PLoS One. 2013. PMID: 23308154 Free PMC article.
144 results