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A roadmap for the functional annotation of protein families: a community perspective.
de Crécy-Lagard V, Amorin de Hegedus R, Arighi C, Babor J, Bateman A, Blaby I, Blaby-Haas C, Bridge AJ, Burley SK, Cleveland S, Colwell LJ, Conesa A, Dallago C, Danchin A, de Waard A, Deutschbauer A, Dias R, Ding Y, Fang G, Friedberg I, Gerlt J, Goldford J, Gorelik M, Gyori BM, Henry C, Hutinet G, Jaroch M, Karp PD, Kondratova L, Lu Z, Marchler-Bauer A, Martin MJ, McWhite C, Moghe GD, Monaghan P, Morgat A, Mungall CJ, Natale DA, Nelson WC, O'Donoghue S, Orengo C, O'Toole KH, Radivojac P, Reed C, Roberts RJ, Rodionov D, Rodionova IA, Rudolf JD, Saleh L, Sheynkman G, Thibaud-Nissen F, Thomas PD, Uetz P, Vallenet D, Carter EW, Weigele PR, Wood V, Wood-Charlson EM, Xu J. de Crécy-Lagard V, et al. Among authors: jaroch m. Database (Oxford). 2022 Aug 12;2022:baac062. doi: 10.1093/database/baac062. Database (Oxford). 2022. PMID: 35961013 Free PMC article.
Beyond Blast: Enabling Microbiologists to Better Extract Literature, Taxonomic Distributions and Gene Neighborhood Information for Protein Families.
Reed CJ, Denise R, Hourihan J, Babor J, Jaroch M, Martinelli M, Hutinet G, de Crécy-Lagard V. Reed CJ, et al. Among authors: jaroch m. bioRxiv [Preprint]. 2024 Jan 2:2023.05.03.539116. doi: 10.1101/2023.05.03.539116. bioRxiv. 2024. Update in: Microb Genom. 2024 Feb;10(2). doi: 10.1099/mgen.0.001183 PMID: 37205517 Free PMC article. Updated. Preprint.
Biosynthesis and function of 7-deazaguanine derivatives in bacteria and phages.
de Crécy-Lagard V, Hutinet G, Cediel-Becerra JDD, Yuan Y, Zallot R, Chevrette MG, Ratnayake RMMN, Jaroch M, Quaiyum S, Bruner S. de Crécy-Lagard V, et al. Among authors: jaroch m. Microbiol Mol Biol Rev. 2024 Mar 27;88(1):e0019923. doi: 10.1128/mmbr.00199-23. Epub 2024 Feb 29. Microbiol Mol Biol Rev. 2024. PMID: 38421302 Review.
Alternate routes to mnm5s2U synthesis in Gram-positive bacteria.
Jaroch M, Sun G, Tsui H-CT, Reed C, Sun J, Jörg M, Winkler ME, Rice KC, Dziergowska A, Stich TA, Dedon PC, Dos Santos PC, de Crécy-Lagard V. Jaroch M, et al. J Bacteriol. 2024 Apr 18;206(4):e0045223. doi: 10.1128/jb.00452-23. Epub 2024 Mar 29. J Bacteriol. 2024. PMID: 38551342 Free PMC article.
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