Li Y - Search Results

1

Prioritization of cancer driver gene with prize-collecting steiner tree by introducing an edge weighted strategy in the personalized gene interaction network.

Zhang SW, Wang ZN, Li Y, Guo WF. Zhang SW, et al. Among authors: li y. BMC Bioinformatics. 2022 Aug 16;23(1):341. doi: 10.1186/s12859-022-04802-y. BMC Bioinformatics. 2022. PMID: 35974311 Free PMC article.

2

Prediction of metabolic fluxes from gene expression data with Huber penalty convex optimization function.

Zhang SW, Gou WL, Li Y. Zhang SW, et al. Among authors: li y. Mol Biosyst. 2017 May 2;13(5):901-909. doi: 10.1039/c6mb00811a. Mol Biosyst. 2017. PMID: 28338129

3

A novel network control model for identifying personalized driver genes in cancer.

Guo WF, Zhang SW, Zeng T, Li Y, Gao J, Chen L. Guo WF, et al. Among authors: li y. PLoS Comput Biol. 2019 Nov 25;15(11):e1007520. doi: 10.1371/journal.pcbi.1007520. eCollection 2019 Nov. PLoS Comput Biol. 2019. PMID: 31765387 Free PMC article.

4

Bayesian differential analysis of gene regulatory networks exploiting genetic perturbations.

Li Y, Liu D, Li T, Zhu Y. Li Y, et al. Among authors: li t. BMC Bioinformatics. 2020 Jan 9;21(1):12. doi: 10.1186/s12859-019-3314-3. BMC Bioinformatics. 2020. PMID: 31918656 Free PMC article.

5

Resilience function uncovers the critical transitions in cancer initiation.

Li Y, Zhang SW. Li Y, et al. Brief Bioinform. 2021 Nov 5;22(6):bbab175. doi: 10.1093/bib/bbab175. Brief Bioinform. 2021. PMID: 33954583

6

Identifying driver genes for individual patients through inductive matrix completion.

Zhang T, Zhang SW, Li Y. Zhang T, et al. Among authors: li y. Bioinformatics. 2021 Dec 7;37(23):4477-4484. doi: 10.1093/bioinformatics/btab477. Bioinformatics. 2021. PMID: 34175939

7

A novel heterophilic graph diffusion convolutional network for identifying cancer driver genes.

Zhang T, Zhang SW, Xie MY, Li Y. Zhang T, et al. Among authors: li y. Brief Bioinform. 2023 May 19;24(3):bbad137. doi: 10.1093/bib/bbad137. Brief Bioinform. 2023. PMID: 37055234

8

PhenoDriver: interpretable framework for studying personalized phenotype-associated driver genes in breast cancer.

Li Y, Zhang SW, Xie MY, Zhang T. Li Y, et al. Brief Bioinform. 2023 Sep 20;24(5):bbad291. doi: 10.1093/bib/bbad291. Brief Bioinform. 2023. PMID: 37738403

9

Diagnosis of Alzheimer's disease by joining dual attention CNN and MLP based on structural MRIs, clinical and genetic data.

Qiang YR, Zhang SW, Li JN, Li Y, Zhou QY; Alzheimer’s Disease Neuroimaging Initiative. Qiang YR, et al. Among authors: li y, li jn. Artif Intell Med. 2023 Nov;145:102678. doi: 10.1016/j.artmed.2023.102678. Epub 2023 Oct 5. Artif Intell Med. 2023. PMID: 37925204

10

Identifying cooperating cancer driver genes in individual patients through hypergraph random walk.

Zhang T, Zhang SW, Xie MY, Li Y. Zhang T, et al. Among authors: li y. J Biomed Inform. 2024 Sep;157:104710. doi: 10.1016/j.jbi.2024.104710. Epub 2024 Aug 17. J Biomed Inform. 2024. PMID: 39159864

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