Hughes TR - Search Results

1

PRIESSTESS: interpretable, high-performing models of the sequence and structure preferences of RNA-binding proteins.

Laverty KU, Jolma A, Pour SE, Zheng H, Ray D, Morris Q, Hughes TR. Laverty KU, et al. Among authors: hughes tr. Nucleic Acids Res. 2022 Oct 28;50(19):e111. doi: 10.1093/nar/gkac694. Nucleic Acids Res. 2022. PMID: 36018788 Free PMC article.

2

Probing microRNAs with microarrays: tissue specificity and functional inference.

Babak T, Zhang W, Morris Q, Blencowe BJ, Hughes TR. Babak T, et al. Among authors: hughes tr. RNA. 2004 Nov;10(11):1813-9. doi: 10.1261/rna.7119904. RNA. 2004. PMID: 15496526 Free PMC article.

3

Transcriptional networks: reverse-engineering gene regulation on a global scale.

Chua G, Robinson MD, Morris Q, Hughes TR. Chua G, et al. Among authors: hughes tr. Curr Opin Microbiol. 2004 Dec;7(6):638-46. doi: 10.1016/j.mib.2004.10.009. Curr Opin Microbiol. 2004. PMID: 15556037 Review.

4

Detection and discovery of RNA modifications using microarrays.

Hiley SL, Jackman J, Babak T, Trochesset M, Morris QD, Phizicky E, Hughes TR. Hiley SL, et al. Among authors: hughes tr. Nucleic Acids Res. 2005 Jan 7;33(1):e2. doi: 10.1093/nar/gni002. Nucleic Acids Res. 2005. PMID: 15640439 Free PMC article.

5

Alternative splicing of conserved exons is frequently species-specific in human and mouse.

Pan Q, Bakowski MA, Morris Q, Zhang W, Frey BJ, Hughes TR, Blencowe BJ. Pan Q, et al. Among authors: hughes tr. Trends Genet. 2005 Feb;21(2):73-7. doi: 10.1016/j.tig.2004.12.004. Trends Genet. 2005. PMID: 15661351

6

Genrate: a generative model that finds and scores new genes and exons in genomic microarray data.

Frey BJ, Morris QD, Zhang W, Mohammad N, Hughes TR. Frey BJ, et al. Among authors: hughes tr. Pac Symp Biocomput. 2005:495-506. Pac Symp Biocomput. 2005. PMID: 15759654 Free article.

7

GenXHC: a probabilistic generative model for cross-hybridization compensation in high-density genome-wide microarray data.

Huang JC, Morris QD, Hughes TR, Frey BJ. Huang JC, et al. Among authors: hughes tr. Bioinformatics. 2005 Jun;21 Suppl 1:i222-31. doi: 10.1093/bioinformatics/bti1045. Bioinformatics. 2005. PMID: 15961461

8

GenRate: a generative model that reveals novel transcripts in genome-tiling microarray data.

Frey BJ, Morris QD, Hughes TR. Frey BJ, et al. Among authors: hughes tr. J Comput Biol. 2006 Mar;13(2):200-14. doi: 10.1089/cmb.2006.13.200. J Comput Biol. 2006. PMID: 16597235

9

Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling.

Kislinger T, Cox B, Kannan A, Chung C, Hu P, Ignatchenko A, Scott MS, Gramolini AO, Morris Q, Hallett MT, Rossant J, Hughes TR, Frey B, Emili A. Kislinger T, et al. Among authors: hughes tr. Cell. 2006 Apr 7;125(1):173-86. doi: 10.1016/j.cell.2006.01.044. Cell. 2006. PMID: 16615898 Free article.

10

Identifying transcription factor functions and targets by phenotypic activation.

Chua G, Morris QD, Sopko R, Robinson MD, Ryan O, Chan ET, Frey BJ, Andrews BJ, Boone C, Hughes TR. Chua G, et al. Among authors: hughes tr. Proc Natl Acad Sci U S A. 2006 Aug 8;103(32):12045-50. doi: 10.1073/pnas.0605140103. Epub 2006 Jul 31. Proc Natl Acad Sci U S A. 2006. PMID: 16880382 Free PMC article.

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