Rodriguez-R LM - Search Results

1

SeqCode: a nomenclatural code for prokaryotes described from sequence data.

Hedlund BP, Chuvochina M, Hugenholtz P, Konstantinidis KT, Murray AE, Palmer M, Parks DH, Probst AJ, Reysenbach AL, Rodriguez-R LM, Rossello-Mora R, Sutcliffe IC, Venter SN, Whitman WB. Hedlund BP, et al. Nat Microbiol. 2022 Oct;7(10):1702-1708. doi: 10.1038/s41564-022-01214-9. Epub 2022 Sep 19. Nat Microbiol. 2022. PMID: 36123442 Free PMC article.

2

Microbiome of the upper troposphere: species composition and prevalence, effects of tropical storms, and atmospheric implications.

DeLeon-Rodriguez N, Lathem TL, Rodriguez-R LM, Barazesh JM, Anderson BE, Beyersdorf AJ, Ziemba LD, Bergin M, Nenes A, Konstantinidis KT. DeLeon-Rodriguez N, et al. Proc Natl Acad Sci U S A. 2013 Feb 12;110(7):2575-80. doi: 10.1073/pnas.1212089110. Epub 2013 Jan 28. Proc Natl Acad Sci U S A. 2013. PMID: 23359712 Free PMC article.

3

Reply to Smith and Griffin: Methods, air flows, and conclusions are robust in the DeLeon-Rodriguez et al. study.

DeLeon-Rodriguez N, Lathem TL, Rodriguez-R LM, Barazesh JM, Anderson BE, Beyersdorf AJ, Ziemba LD, Bergin M, Nenes A, Konstantinidis KT. DeLeon-Rodriguez N, et al. Proc Natl Acad Sci U S A. 2013 Jun 4;110(23):E2085. doi: 10.1073/pnas.1304466110. Proc Natl Acad Sci U S A. 2013. PMID: 23882709 Free PMC article. No abstract available.

4

A user's guide to quantitative and comparative analysis of metagenomic datasets.

Luo C, Rodriguez-R LM, Konstantinidis KT. Luo C, et al. Methods Enzymol. 2013;531:525-47. doi: 10.1016/B978-0-12-407863-5.00023-X. Methods Enzymol. 2013. PMID: 24060135

5

Nonpareil: a redundancy-based approach to assess the level of coverage in metagenomic datasets.

Rodriguez-R LM, Konstantinidis KT. Rodriguez-R LM, et al. Bioinformatics. 2014 Mar 1;30(5):629-35. doi: 10.1093/bioinformatics/btt584. Epub 2013 Oct 11. Bioinformatics. 2014. PMID: 24123672

6

Soil microbial community responses to a decade of warming as revealed by comparative metagenomics.

Luo C, Rodriguez-R LM, Johnston ER, Wu L, Cheng L, Xue K, Tu Q, Deng Y, He Z, Shi JZ, Yuan MM, Sherry RA, Li D, Luo Y, Schuur EA, Chain P, Tiedje JM, Zhou J, Konstantinidis KT. Luo C, et al. Appl Environ Microbiol. 2014 Mar;80(5):1777-86. doi: 10.1128/AEM.03712-13. Epub 2013 Dec 27. Appl Environ Microbiol. 2014. PMID: 24375144 Free PMC article.

7

MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences.

Luo C, Rodriguez-R LM, Konstantinidis KT. Luo C, et al. Nucleic Acids Res. 2014 Apr;42(8):e73. doi: 10.1093/nar/gku169. Epub 2014 Mar 3. Nucleic Acids Res. 2014. PMID: 24589583 Free PMC article.

8

Strengths and limitations of 16S rRNA gene amplicon sequencing in revealing temporal microbial community dynamics.

Poretsky R, Rodriguez-R LM, Luo C, Tsementzi D, Konstantinidis KT. Poretsky R, et al. PLoS One. 2014 Apr 8;9(4):e93827. doi: 10.1371/journal.pone.0093827. eCollection 2014. PLoS One. 2014. PMID: 24714158 Free PMC article.

9

Estimating coverage in metagenomic data sets and why it matters.

Rodriguez-R LM, Konstantinidis KT. Rodriguez-R LM, et al. ISME J. 2014 Nov;8(11):2349-51. doi: 10.1038/ismej.2014.76. Epub 2014 May 13. ISME J. 2014. PMID: 24824669 Free PMC article. No abstract available.

10

Detecting nitrous oxide reductase (NosZ) genes in soil metagenomes: method development and implications for the nitrogen cycle.

Orellana LH, Rodriguez-R LM, Higgins S, Chee-Sanford JC, Sanford RA, Ritalahti KM, Löffler FE, Konstantinidis KT. Orellana LH, et al. mBio. 2014 Jun 3;5(3):e01193-14. doi: 10.1128/mBio.01193-14. mBio. 2014. PMID: 24895307 Free PMC article.

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