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Accessing the Variability of Multicopy Genes in Complex Genomes using Unassembled Next-Generation Sequencing Reads: The Case of Trypanosoma cruzi Multigene Families.
Reis-Cunha JL, Coqueiro-Dos-Santos A, Pimenta-Carvalho SA, Marques LP, Rodrigues-Luiz GF, Baptista RP, Almeida LV, Honorato NRM, Lobo FP, Fraga VG, Galvão LMDC, Bueno LL, Fujiwara RT, Cardoso MS, Cerqueira GC, Bartholomeu DC. Reis-Cunha JL, et al. Among authors: pimenta carvalho sa. mBio. 2022 Dec 20;13(6):e0231922. doi: 10.1128/mbio.02319-22. Epub 2022 Oct 20. mBio. 2022. PMID: 36264102 Free PMC article.
Ancestral aneuploidy and stable chromosomal duplication resulting in differential genome structure and gene expression control in trypanosomatid parasites.
Reis-Cunha JL, Pimenta-Carvalho SA, Almeida LV, Coqueiro-Dos-Santos A, Marques CA, Black JA, Damasceno J, McCulloch R, Bartholomeu DC, Jeffares DC. Reis-Cunha JL, et al. Among authors: pimenta carvalho sa. Genome Res. 2024 Apr 25;34(3):441-453. doi: 10.1101/gr.278550.123. Genome Res. 2024. PMID: 38604731 Free PMC article.