Tsai ST - Search Results

1

Path sampling of recurrent neural networks by incorporating known physics.

Tsai ST, Fields E, Xu Y, Kuo EJ, Tiwary P. Tsai ST, et al. Nat Commun. 2022 Nov 24;13(1):7231. doi: 10.1038/s41467-022-34780-x. Nat Commun. 2022. PMID: 36433982 Free PMC article.

2

Kinetics of Ligand-Protein Dissociation from All-Atom Simulations: Are We There Yet?

Ribeiro JML, Tsai ST, Pramanik D, Wang Y, Tiwary P. Ribeiro JML, et al. Among authors: tsai st. Biochemistry. 2019 Jan 22;58(3):156-165. doi: 10.1021/acs.biochem.8b00977. Epub 2018 Dec 28. Biochemistry. 2019. PMID: 30547565 Review.

3

Multi-dimensional spectral gap optimization of order parameters (SGOOP) through conditional probability factorization.

Smith Z, Pramanik D, Tsai ST, Tiwary P. Smith Z, et al. Among authors: tsai st. J Chem Phys. 2018 Dec 21;149(23):234105. doi: 10.1063/1.5064856. J Chem Phys. 2018. PMID: 30579304

4

Reaction coordinates and rate constants for liquid droplet nucleation: Quantifying the interplay between driving force and memory.

Tsai ST, Smith Z, Tiwary P. Tsai ST, et al. J Chem Phys. 2019 Oct 21;151(15):154106. doi: 10.1063/1.5124385. J Chem Phys. 2019. PMID: 31640371

5

Learning molecular dynamics with simple language model built upon long short-term memory neural network.

Tsai ST, Kuo EJ, Tiwary P. Tsai ST, et al. Nat Commun. 2020 Oct 9;11(1):5115. doi: 10.1038/s41467-020-18959-8. Nat Commun. 2020. PMID: 33037228 Free PMC article.

6

SGOOP-d: Estimating Kinetic Distances and Reaction Coordinate Dimensionality for Rare Event Systems from Biased/Unbiased Simulations.

Tsai ST, Smith Z, Tiwary P. Tsai ST, et al. J Chem Theory Comput. 2021 Nov 9;17(11):6757-6765. doi: 10.1021/acs.jctc.1c00431. Epub 2021 Oct 18. J Chem Theory Comput. 2021. PMID: 34662516

7

Toward Automated Sampling of Polymorph Nucleation and Free Energies with the SGOOP and Metadynamics.

Zou Z, Tsai ST, Tiwary P. Zou Z, et al. Among authors: tsai st. J Phys Chem B. 2021 Dec 2;125(47):13049-13056. doi: 10.1021/acs.jpcb.1c07595. Epub 2021 Nov 17. J Phys Chem B. 2021. PMID: 34788047

8

Driving and characterizing nucleation of urea and glycine polymorphs in water.

Zou Z, Beyerle ER, Tsai ST, Tiwary P. Zou Z, et al. Among authors: tsai st. Proc Natl Acad Sci U S A. 2023 Feb 14;120(7):e2216099120. doi: 10.1073/pnas.2216099120. Epub 2023 Feb 9. Proc Natl Acad Sci U S A. 2023. PMID: 36757888 Free PMC article.

9

Crumpling-origami transition for twisting cylindrical shells.

Wang LM, Tsai ST, Lee CY, Hsiao PY, Deng JW, Fan Chiang HC, Fei Y, Hong TM. Wang LM, et al. Among authors: tsai st. Phys Rev E. 2020 May;101(5-1):053001. doi: 10.1103/PhysRevE.101.053001. Phys Rev E. 2020. PMID: 32575209

10

Mitigating mitochondrial dysfunction and neuroinflammation by hematoma aspiration in a new surgical model for severe intracerebral hemorrhage.

Hu WF, Lee CH, Pang CY, Huang HY, Tsai ST, Wang PK, Shih MT, Cheah PY, Wu YF, Tsai AP, Tseng KY, Airavaara M, Liew HK. Hu WF, et al. Among authors: tsai st. Exp Neurol. 2024 Dec 7;385:115098. doi: 10.1016/j.expneurol.2024.115098. Online ahead of print. Exp Neurol. 2024. PMID: 39653108 Free article.

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