Yamada TG - Search Results

1

An explainable deep learning-based algorithm with an attention mechanism for predicting the live birth potential of mouse embryos.

Tokuoka Y, Yamada TG, Mashiko D, Ikeda Z, Kobayashi TJ, Yamagata K, Funahashi A. Tokuoka Y, et al. Among authors: yamada tg. Artif Intell Med. 2022 Dec;134:102432. doi: 10.1016/j.artmed.2022.102432. Epub 2022 Nov 2. Artif Intell Med. 2022. PMID: 36462898 Free article.

2

Quantitative analysis of sensitivity to a Wnt3a gradient in determination of the pole-to-pole axis of mitotic cells by using a microfluidic device.

Hiraiwa T, Nakai Y, Yamada TG, Tanimoto R, Kimura H, Matsumoto Y, Miki N, Hiroi N, Funahashi A. Hiraiwa T, et al. Among authors: yamada tg. FEBS Open Bio. 2018 Nov 9;8(12):1920-1935. doi: 10.1002/2211-5463.12525. eCollection 2018 Dec. FEBS Open Bio. 2018. PMID: 30524943 Free PMC article.

3

Transcriptome analysis of the anhydrobiotic cell line Pv11 infers the mechanism of desiccation tolerance and recovery.

Yamada TG, Suetsugu Y, Deviatiiarov R, Gusev O, Cornette R, Nesmelov A, Hiroi N, Kikawada T, Funahashi A. Yamada TG, et al. Sci Rep. 2018 Dec 18;8(1):17941. doi: 10.1038/s41598-018-36124-6. Sci Rep. 2018. PMID: 30560869 Free PMC article.

4

Activation of cell migration via morphological changes in focal adhesions depends on shear stress in MYCN-amplified neuroblastoma cells.

Hiraiwa T, Yamada TG, Miki N, Funahashi A, Hiroi N. Hiraiwa T, et al. Among authors: yamada tg. J R Soc Interface. 2019 Mar 29;16(152):20180934. doi: 10.1098/rsif.2018.0934. J R Soc Interface. 2019. PMID: 30836897 Free PMC article.

5

Predicting the future direction of cell movement with convolutional neural networks.

Nishimoto S, Tokuoka Y, Yamada TG, Hiroi NF, Funahashi A. Nishimoto S, et al. Among authors: yamada tg. PLoS One. 2019 Sep 4;14(9):e0221245. doi: 10.1371/journal.pone.0221245. eCollection 2019. PLoS One. 2019. PMID: 31483827 Free PMC article.

6

XitoSBML: A Modeling Tool for Creating Spatial Systems Biology Markup Language Models From Microscopic Images.

Ii K, Mashimo K, Ozeki M, Yamada TG, Hiroi N, Funahashi A. Ii K, et al. Among authors: yamada tg. Front Genet. 2019 Oct 22;10:1027. doi: 10.3389/fgene.2019.01027. eCollection 2019. Front Genet. 2019. PMID: 31749833 Free PMC article.

7

Identification of a master transcription factor and a regulatory mechanism for desiccation tolerance in the anhydrobiotic cell line Pv11.

Yamada TG, Hiki Y, Hiroi NF, Shagimardanova E, Gusev O, Cornette R, Kikawada T, Funahashi A. Yamada TG, et al. PLoS One. 2020 Mar 19;15(3):e0230218. doi: 10.1371/journal.pone.0230218. eCollection 2020. PLoS One. 2020. PMID: 32191739 Free PMC article.

8

3D convolutional neural networks-based segmentation to acquire quantitative criteria of the nucleus during mouse embryogenesis.

Tokuoka Y, Yamada TG, Mashiko D, Ikeda Z, Hiroi NF, Kobayashi TJ, Yamagata K, Funahashi A. Tokuoka Y, et al. Among authors: yamada tg. NPJ Syst Biol Appl. 2020 Oct 20;6(1):32. doi: 10.1038/s41540-020-00152-8. NPJ Syst Biol Appl. 2020. PMID: 33082352 Free PMC article.

9

Genome-Wide Role of HSF1 in Transcriptional Regulation of Desiccation Tolerance in the Anhydrobiotic Cell Line, Pv11.

Tokumoto S, Miyata Y, Deviatiiarov R, Yamada TG, Hiki Y, Kozlova O, Yoshida Y, Cornette R, Funahashi A, Shagimardanova E, Gusev O, Kikawada T. Tokumoto S, et al. Among authors: yamada tg. Int J Mol Sci. 2021 May 28;22(11):5798. doi: 10.3390/ijms22115798. Int J Mol Sci. 2021. PMID: 34071490 Free PMC article.

10

Cas9-mediated genome editing reveals a significant contribution of calcium signaling pathways to anhydrobiosis in Pv11 cells.

Miyata Y, Fuse H, Tokumoto S, Hiki Y, Deviatiiarov R, Yoshida Y, Yamada TG, Cornette R, Gusev O, Shagimardanova E, Funahashi A, Kikawada T. Miyata Y, et al. Among authors: yamada tg. Sci Rep. 2021 Oct 5;11(1):19698. doi: 10.1038/s41598-021-98905-w. Sci Rep. 2021. PMID: 34611198 Free PMC article.

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