Alvarez JM - Search Results

1

Validation of a high-confidence regulatory network for gene-to-NUE phenotype in field-grown rice.

Shanks CM, Huang J, Cheng CY, Shih HS, Brooks MD, Alvarez JM, Araus V, Swift J, Henry A, Coruzzi GM. Shanks CM, et al. Among authors: alvarez jm. Front Plant Sci. 2022 Nov 25;13:1006044. doi: 10.3389/fpls.2022.1006044. eCollection 2022. Front Plant Sci. 2022. PMID: 36507422 Free PMC article.

2

Network Walking charts transcriptional dynamics of nitrogen signaling by integrating validated and predicted genome-wide interactions.

Brooks MD, Cirrone J, Pasquino AV, Alvarez JM, Swift J, Mittal S, Juang CL, Varala K, Gutiérrez RA, Krouk G, Shasha D, Coruzzi GM. Brooks MD, et al. Among authors: alvarez jm. Nat Commun. 2019 Apr 5;10(1):1569. doi: 10.1038/s41467-019-09522-1. Nat Commun. 2019. PMID: 30952851 Free PMC article.

3

Local Changes in Chromatin Accessibility and Transcriptional Networks Underlying the Nitrate Response in Arabidopsis Roots.

Alvarez JM, Moyano TC, Zhang T, Gras DE, Herrera FJ, Araus V, O'Brien JA, Carrillo L, Medina J, Vicente-Carbajosa J, Jiang J, Gutiérrez RA. Alvarez JM, et al. Mol Plant. 2019 Dec 2;12(12):1545-1560. doi: 10.1016/j.molp.2019.09.002. Epub 2019 Sep 14. Mol Plant. 2019. PMID: 31526863 Free article.

4

A balancing act: how plants integrate nitrogen and water signals.

Araus V, Swift J, Alvarez JM, Henry A, Coruzzi GM. Araus V, et al. Among authors: alvarez jm. J Exp Bot. 2020 Jul 25;71(15):4442-4451. doi: 10.1093/jxb/eraa054. J Exp Bot. 2020. PMID: 31990028 Free PMC article. Review.

5

Transient genome-wide interactions of the master transcription factor NLP7 initiate a rapid nitrogen-response cascade.

Alvarez JM, Schinke AL, Brooks MD, Pasquino A, Leonelli L, Varala K, Safi A, Krouk G, Krapp A, Coruzzi GM. Alvarez JM, et al. Nat Commun. 2020 Mar 2;11(1):1157. doi: 10.1038/s41467-020-14979-6. Nat Commun. 2020. PMID: 32123177 Free PMC article.

6

Nitrate in 2020: Thirty Years from Transport to Signaling Networks.

Vidal EA, Alvarez JM, Araus V, Riveras E, Brooks MD, Krouk G, Ruffel S, Lejay L, Crawford NM, Coruzzi GM, Gutiérrez RA. Vidal EA, et al. Among authors: alvarez jm. Plant Cell. 2020 Jul;32(7):2094-2119. doi: 10.1105/tpc.19.00748. Epub 2020 Mar 13. Plant Cell. 2020. PMID: 32169959 Free PMC article. Review.

7

Nutrient dose-responsive transcriptome changes driven by Michaelis-Menten kinetics underlie plant growth rates.

Swift J, Alvarez JM, Araus V, Gutiérrez RA, Coruzzi GM. Swift J, et al. Among authors: alvarez jm. Proc Natl Acad Sci U S A. 2020 Jun 9;117(23):12531-12540. doi: 10.1073/pnas.1918619117. Epub 2020 May 15. Proc Natl Acad Sci U S A. 2020. PMID: 32414922 Free PMC article.

8

ConnecTF: A platform to integrate transcription factor-gene interactions and validate regulatory networks.

Brooks MD, Juang CL, Katari MS, Alvarez JM, Pasquino A, Shih HJ, Huang J, Shanks C, Cirrone J, Coruzzi GM. Brooks MD, et al. Among authors: alvarez jm. Plant Physiol. 2021 Feb 25;185(1):49-66. doi: 10.1093/plphys/kiaa012. Plant Physiol. 2021. PMID: 33631799 Free PMC article.

9

Time-Based Systems Biology Approaches to Capture and Model Dynamic Gene Regulatory Networks.

Alvarez JM, Brooks MD, Swift J, Coruzzi GM. Alvarez JM, et al. Annu Rev Plant Biol. 2021 Jun 17;72:105-131. doi: 10.1146/annurev-arplant-081320-090914. Epub 2021 Mar 5. Annu Rev Plant Biol. 2021. PMID: 33667112 Free PMC article. Review.

10

Spatiotemporal analysis identifies ABF2 and ABF3 as key hubs of endodermal response to nitrate.

Contreras-López O, Vidal EA, Riveras E, Alvarez JM, Moyano TC, Sparks EE, Medina J, Pasquino A, Benfey PN, Coruzzi GM, Gutiérrez RA. Contreras-López O, et al. Among authors: alvarez jm. Proc Natl Acad Sci U S A. 2022 Jan 25;119(4):e2107879119. doi: 10.1073/pnas.2107879119. Proc Natl Acad Sci U S A. 2022. PMID: 35046022 Free PMC article.

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