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Page 1
Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies.
Talsania K, Shen TW, Chen X, Jaeger E, Li Z, Chen Z, Chen W, Tran B, Kusko R, Wang L, Pang AWC, Yang Z, Choudhari S, Colgan M, Fang LT, Carroll A, Shetty J, Kriga Y, German O, Smirnova T, Liu T, Li J, Kellman B, Hong K, Hastie AR, Natarajan A, Moshrefi A, Granat A, Truong T, Bombardi R, Mankinen V, Meerzaman D, Mason CE, Collins J, Stahlberg E, Xiao C, Wang C, Xiao W, Zhao Y. Talsania K, et al. Among authors: meerzaman d. Genome Biol. 2022 Dec 13;23(1):255. doi: 10.1186/s13059-022-02816-6. Genome Biol. 2022. PMID: 36514120 Free PMC article.
Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing.
Fang LT, Zhu B, Zhao Y, Chen W, Yang Z, Kerrigan L, Langenbach K, de Mars M, Lu C, Idler K, Jacob H, Zheng Y, Ren L, Yu Y, Jaeger E, Schroth GP, Abaan OD, Talsania K, Lack J, Shen TW, Chen Z, Stanbouly S, Tran B, Shetty J, Kriga Y, Meerzaman D, Nguyen C, Petitjean V, Sultan M, Cam M, Mehta M, Hung T, Peters E, Kalamegham R, Sahraeian SME, Mohiyuddin M, Guo Y, Yao L, Song L, Lam HYK, Drabek J, Vojta P, Maestro R, Gasparotto D, Kõks S, Reimann E, Scherer A, Nordlund J, Liljedahl U, Jensen RV, Pirooznia M, Li Z, Xiao C, Sherry ST, Kusko R, Moos M, Donaldson E, Tezak Z, Ning B, Tong W, Li J, Duerken-Hughes P, Catalanotti C, Maheshwari S, Shuga J, Liang WS, Keats J, Adkins J, Tassone E, Zismann V, McDaniel T, Trent J, Foox J, Butler D, Mason CE, Hong H, Shi L, Wang C, Xiao W; Somatic Mutation Working Group of Sequencing Quality Control Phase II Consortium. Fang LT, et al. Among authors: meerzaman d. Nat Biotechnol. 2021 Sep;39(9):1151-1160. doi: 10.1038/s41587-021-00993-6. Epub 2021 Sep 9. Nat Biotechnol. 2021. PMID: 34504347 Free PMC article.
Whole organism profiling of the Timp gene family.
Peeney D, Fan Y, Gurung S, Lazaroff C, Ratnayake S, Warner A, Karim B, Meerzaman D, Stetler-Stevenson WG. Peeney D, et al. Among authors: meerzaman d. Matrix Biol Plus. 2023 Apr 1;18:100132. doi: 10.1016/j.mbplus.2023.100132. eCollection 2023 Jun. Matrix Biol Plus. 2023. PMID: 37095886 Free PMC article.
Cellular fate of a plant virus immunotherapy candidate.
Omole AO, Affonso de Oliveira JF, Sutorus L, Karan S, Zhao Z, Neun BW, Cedrone E, Clogston JD, Xu J, Sierk M, Chen Q, Meerzaman D, Dobrovolskaia MA, Steinmetz NF. Omole AO, et al. Among authors: meerzaman d. Commun Biol. 2024 Oct 24;7(1):1382. doi: 10.1038/s42003-024-06982-0. Commun Biol. 2024. PMID: 39443610 Free PMC article.
Flotillin-2 regulates epidermal growth factor receptor activation, degradation by Cbl-mediated ubiquitination, and cancer growth.
Wisniewski DJ, Liyasova MS, Korrapati S, Zhang X, Ratnayake S, Chen Q, Gilbert SF, Catalano A, Voeller D, Meerzaman D, Guha U, Porat-Shliom N, Annunziata CM, Lipkowitz S. Wisniewski DJ, et al. Among authors: meerzaman d. J Biol Chem. 2023 Jan;299(1):102766. doi: 10.1016/j.jbc.2022.102766. Epub 2022 Dec 5. J Biol Chem. 2023. PMID: 36470425 Free PMC article.
Ten challenges and opportunities in computational immuno-oncology.
Bao R, Hutson A, Madabhushi A, Jonsson VD, Rosario SR, Barnholtz-Sloan JS, Fertig EJ, Marathe H, Harris L, Altreuter J, Chen Q, Dignam J, Gentles AJ, Gonzalez-Kozlova E, Gnjatic S, Kim E, Long M, Morgan M, Ruppin E, Valen DV, Zhang H, Vokes N, Meerzaman D, Liu S, Van Allen EM, Xing Y. Bao R, et al. Among authors: meerzaman d. J Immunother Cancer. 2024 Oct 26;12(10):e009721. doi: 10.1136/jitc-2024-009721. J Immunother Cancer. 2024. PMID: 39461879 Free PMC article. Review.
Phosphorylation by JNK switches BRD4 functions.
Devaiah BN, Singh AK, Mu J, Chen Q, Meerzaman D, Singer DS. Devaiah BN, et al. Among authors: meerzaman d. Mol Cell. 2024 Nov 21;84(22):4282-4296.e7. doi: 10.1016/j.molcel.2024.09.030. Epub 2024 Oct 24. Mol Cell. 2024. PMID: 39454579 Free PMC article.
TRAIL-induced cytokine production via NFKB2 pathway promotes neutrophil chemotaxis and immune suppression in triple negative breast cancers.
Kundu M, Greer YE, Lobanov A, Ridnour L, Donahue RN, Ng Y, Ratnayake S, Voeller D, Weltz S, Chen Q, Lockett SJ, Cam M, Meerzaman D, Wink DA, Weigert R, Lipkowitz S. Kundu M, et al. Among authors: meerzaman d. bioRxiv [Preprint]. 2024 Jul 23:2024.07.19.604341. doi: 10.1101/2024.07.19.604341. bioRxiv. 2024. PMID: 39091795 Free PMC article. Preprint.
86 results