Lindorff-Larsen K - Search Results

1

Assessment of models for calculating the hydrodynamic radius of intrinsically disordered proteins.

Pesce F, Newcombe EA, Seiffert P, Tranchant EE, Olsen JG, Grace CR, Kragelund BB, Lindorff-Larsen K. Pesce F, et al. Biophys J. 2023 Jan 17;122(2):310-321. doi: 10.1016/j.bpj.2022.12.013. Epub 2022 Dec 14. Biophys J. 2023. PMID: 36518077 Free PMC article.

2

Correction to Variational Optimization of an All-Atom Implicit Solvent Force Field To Match Explicit Solvent Simulation Data.

Bottaro S, Lindorff-Larsen K, Best RB. Bottaro S, et al. J Chem Theory Comput. 2017 Jan 10;13(1):392. doi: 10.1021/acs.jctc.6b01188. Epub 2016 Dec 19. J Chem Theory Comput. 2017. PMID: 27990814 Free PMC article. No abstract available.

3

Systematic validation of protein force fields against experimental data.

Lindorff-Larsen K, Maragakis P, Piana S, Eastwood MP, Dror RO, Shaw DE. Lindorff-Larsen K, et al. PLoS One. 2012;7(2):e32131. doi: 10.1371/journal.pone.0032131. Epub 2012 Feb 22. PLoS One. 2012. PMID: 22384157 Free PMC article.

4

Thiol alkylation below neutral pH.

Lindorff-Larsen K, Winther JR. Lindorff-Larsen K, et al. Anal Biochem. 2000 Nov 15;286(2):308-10. doi: 10.1006/abio.2000.4807. Anal Biochem. 2000. PMID: 11067758 No abstract available.

5

Atomistic description of the folding of a dimeric protein.

Piana S, Lindorff-Larsen K, Shaw DE. Piana S, et al. J Phys Chem B. 2013 Oct 24;117(42):12935-42. doi: 10.1021/jp4020993. Epub 2013 Aug 15. J Phys Chem B. 2013. PMID: 23882999 Free article.

6

Conformational Rigidity and Protein Dynamics at Distinct Timescales Regulate PTP1B Activity and Allostery.

Choy MS, Li Y, Machado LESF, Kunze MBA, Connors CR, Wei X, Lindorff-Larsen K, Page R, Peti W. Choy MS, et al. Mol Cell. 2017 Feb 16;65(4):644-658.e5. doi: 10.1016/j.molcel.2017.01.014. Mol Cell. 2017. PMID: 28212750 Free PMC article.

7

Automated Event Detection and Activity Monitoring in Long Molecular Dynamics Simulations.

Wriggers W, Stafford KA, Shan Y, Piana S, Maragakis P, Lindorff-Larsen K, Miller PJ, Gullingsrud J, Rendleman CA, Eastwood MP, Dror RO, Shaw DE. Wriggers W, et al. J Chem Theory Comput. 2009 Oct 13;5(10):2595-605. doi: 10.1021/ct900229u. J Chem Theory Comput. 2009. PMID: 26631775

8

Atomic-level description of ubiquitin folding.

Piana S, Lindorff-Larsen K, Shaw DE. Piana S, et al. Proc Natl Acad Sci U S A. 2013 Apr 9;110(15):5915-20. doi: 10.1073/pnas.1218321110. Epub 2013 Mar 15. Proc Natl Acad Sci U S A. 2013. PMID: 23503848 Free PMC article.

9

Evaluating the effects of cutoffs and treatment of long-range electrostatics in protein folding simulations.

Piana S, Lindorff-Larsen K, Dirks RM, Salmon JK, Dror RO, Shaw DE. Piana S, et al. PLoS One. 2012;7(6):e39918. doi: 10.1371/journal.pone.0039918. Epub 2012 Jun 29. PLoS One. 2012. PMID: 22768169 Free PMC article.

10

Protein folding kinetics and thermodynamics from atomistic simulation.

Piana S, Lindorff-Larsen K, Shaw DE. Piana S, et al. Proc Natl Acad Sci U S A. 2012 Oct 30;109(44):17845-50. doi: 10.1073/pnas.1201811109. Epub 2012 Jul 20. Proc Natl Acad Sci U S A. 2012. PMID: 22822217 Free PMC article.

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