Prokopenko D - Search Results

1

Unsupervised outlier detection applied to SARS-CoV-2 nucleotide sequences can identify sequences of common variants and other variants of interest.

Hahn G, Lee S, Prokopenko D, Abraham J, Novak T, Hecker J, Cho M, Khurana S, Baden LR, Randolph AG, Weiss ST, Lange C. Hahn G, et al. Among authors: prokopenko d. BMC Bioinformatics. 2022 Dec 19;23(1):547. doi: 10.1186/s12859-022-05105-y. BMC Bioinformatics. 2022. PMID: 36536276 Free PMC article.

2

[Analysis of perfect and mismatched DNA duplexes by a generic hexanucleotide microchip].

Khomiakova EB, Livshits MA, Sharonov AIu, Prokopenko DV, Mirzabekov AD. Khomiakova EB, et al. Among authors: prokopenko dv. Mol Biol (Mosk). 2003 Jul-Aug;37(4):726-41. Mol Biol (Mosk). 2003. PMID: 12942647 Russian.

3

TMEM106B and CPOX are genetic determinants of cerebrospinal fluid Alzheimer's disease biomarker levels.

Hong S, Dobricic V, Ohlei O, Bos I, Vos SJB, Prokopenko D, Tijms BM, Andreasson U, Blennow K, Vandenberghe R, Gabel S, Scheltens P, Teunissen CE, Engelborghs S, Frisoni G, Blin O, Richardson JC, Bordet R; Alzheimer's Disease Neuroimaging Initiative (ADNI); Lleó A, Alcolea D, Popp J, Clark C, Peyratout G, Martinez-Lage P, Tainta M, Dobson RJB, Legido-Quigley C, Sleegers K, Van Broeckhoven C, Tanzi RE, Ten Kate M, Wittig M, Franke A, Lill CM, Barkhof F, Lovestone S, Streffer J, Zetterberg H, Visser PJ, Bertram L. Hong S, et al. Among authors: prokopenko d. Alzheimers Dement. 2021 Oct;17(10):1628-1640. doi: 10.1002/alz.12330. Epub 2021 May 14. Alzheimers Dement. 2021. PMID: 33991015

4

Specificity of mammalian Y-box binding protein p50 in interaction with ss and ds DNA analyzed with generic oligonucleotide microchip.

Zasedateleva OA, Krylov AS, Prokopenko DV, Skabkin MA, Ovchinnikov LP, Kolchinsky A, Mirzabekov AD. Zasedateleva OA, et al. Among authors: prokopenko dv. J Mol Biol. 2002 Nov 15;324(1):73-87. doi: 10.1016/s0022-2836(02)00937-3. J Mol Biol. 2002. PMID: 12421560

5

Kinetic effects on signal normalization in oligonucleotide microchips with labeled immobilized probes.

Pan'kov SV, Chechetkin VR, Somova OG, Antonova OV, Moiseeva OV, Prokopenko DV, Yurasov RA, Gryadunov DA, Chudinov AV. Pan'kov SV, et al. Among authors: prokopenko dv. J Biomol Struct Dyn. 2009 Oct;27(2):235-44. doi: 10.1080/07391102.2009.10507312. J Biomol Struct Dyn. 2009. PMID: 19583448

6

Analysis of binding specificity of disulfide bonded dimeric lambda-Cro V55C protein with generic hexamer oligonucleotide microchip.

Chechetkin VR, Prokopenko DV, Zasedateleva OA, Gitelson GI, Lomakin ES, Livshits MA, Malinina L, Turygin AY, Krylov AS, Mirzabekov AD. Chechetkin VR, et al. Among authors: prokopenko dv. J Biomol Struct Dyn. 2003 Dec;21(3):425-33. doi: 10.1080/07391102.2003.10506937. J Biomol Struct Dyn. 2003. PMID: 14616037

7

Using Network Methodology to Infer Population Substructure.

Prokopenko D, Hecker J, Silverman E, Nöthen MM, Schmid M, Lange C, Loehlein Fier H. Prokopenko D, et al. PLoS One. 2015 Jun 22;10(6):e0130708. doi: 10.1371/journal.pone.0130708. eCollection 2015. PLoS One. 2015. PMID: 26098940 Free PMC article.

8

On the Recombination Rate Estimation in the Presence of Population Substructure.

Hecker J, Prokopenko D, Lange C, Fier HL. Hecker J, et al. Among authors: prokopenko d. PLoS One. 2015 Dec 30;10(12):e0145152. doi: 10.1371/journal.pone.0145152. eCollection 2015. PLoS One. 2015. PMID: 26716445 Free PMC article.

9

Utilizing the Jaccard index to reveal population stratification in sequencing data: a simulation study and an application to the 1000 Genomes Project.

Prokopenko D, Hecker J, Silverman EK, Pagano M, Nöthen MM, Dina C, Lange C, Fier HL. Prokopenko D, et al. Bioinformatics. 2016 May 1;32(9):1366-72. doi: 10.1093/bioinformatics/btv752. Epub 2015 Dec 31. Bioinformatics. 2016. PMID: 26722118 Free PMC article.

10

On the association analysis of genome-sequencing data: A spatial clustering approach for partitioning the entire genome into nonoverlapping windows.

Loehlein Fier H, Prokopenko D, Hecker J, Cho MH, Silverman EK, Weiss ST, Tanzi RE, Lange C. Loehlein Fier H, et al. Among authors: prokopenko d. Genet Epidemiol. 2017 May;41(4):332-340. doi: 10.1002/gepi.22040. Epub 2017 Mar 20. Genet Epidemiol. 2017. PMID: 28318110 Free PMC article.

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