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Automatic ploidy prediction and quality assessment of human blastocysts using time-lapse imaging.
Rajendran S, Brendel M, Barnes J, Zhan Q, Malmsten JE, Zisimopoulos P, Sigaras A, Ofori-Atta K, Meseguer M, Miller KA, Hoffman D, Rosenwaks Z, Elemento O, Zaninovic N, Hajirasouliha I. Rajendran S, et al. Among authors: hajirasouliha i. Nat Commun. 2024 Sep 5;15(1):7756. doi: 10.1038/s41467-024-51823-7. Nat Commun. 2024. PMID: 39237547 Free PMC article.
cloudrnaSPAdes: isoform assembly using bulk barcoded RNA sequencing data.
Meleshko D, Prjbelski AD, Raiko M, Tomescu AI, Tilgner H, Hajirasouliha I. Meleshko D, et al. Among authors: hajirasouliha i. Bioinformatics. 2024 Feb 1;40(2):btad781. doi: 10.1093/bioinformatics/btad781. Bioinformatics. 2024. PMID: 38262343 Free PMC article.
Automatic Ploidy Prediction and Quality Assessment of Human Blastocyst Using Time-Lapse Imaging.
Rajendran S, Brendel M, Barnes J, Zhan Q, Malmsten JE, Zisimopoulos P, Sigaras A, Ofori-Atta K, Meseguer M, Miller KA, Hoffman D, Rosenwaks Z, Elemento O, Zaninovic N, Hajirasouliha I. Rajendran S, et al. Among authors: hajirasouliha i. bioRxiv [Preprint]. 2023 Sep 2:2023.08.31.555741. doi: 10.1101/2023.08.31.555741. bioRxiv. 2023. Update in: Nat Commun. 2024 Sep 5;15(1):7756. doi: 10.1038/s41467-024-51823-7 PMID: 37693566 Free PMC article. Updated. Preprint.
Ariadne: synthetic long read deconvolution using assembly graphs.
Mak L, Meleshko D, Danko DC, Barakzai WN, Maharjan S, Belchikov N, Hajirasouliha I. Mak L, et al. Among authors: hajirasouliha i. Genome Biol. 2023 Aug 28;24(1):197. doi: 10.1186/s13059-023-03033-5. Genome Biol. 2023. PMID: 37641111 Free PMC article.
CAMP: A modular metagenomics analysis system for integrated multi-step data exploration.
Mak L, Tierney B, Ronkowski C, Toscan RB, Turhan B, Toomey M, Martinez JSA, Fu C, Lucaci AG, Solano AHB, Setubal JC, Henriksen JR, Zimmerman S, Kopbayeva M, Noyvert A, Iwan Z, Kar S, Nakazawa N, Meleshko D, Horyslavets D, Kantsypa V, Frolova A, Kahles A, Danko D, Elhaik E, Labaj P, Mangul S; International MetaSUB Consortium; Mason CE, Hajirasouliha I. Mak L, et al. Among authors: hajirasouliha i. bioRxiv [Preprint]. 2024 Sep 14:2023.04.09.536171. doi: 10.1101/2023.04.09.536171. bioRxiv. 2024. PMID: 37066359 Free PMC article. Preprint.
Back in 3D-a report on Genome Informatics 2022.
Hajirasouliha I, Semrau S. Hajirasouliha I, et al. Genome Biol. 2023 Mar 28;24(1):57. doi: 10.1186/s13059-023-02870-8. Genome Biol. 2023. PMID: 36978161 Free PMC article.
69 results