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Page 1
Automatic bad-pixel mask maker for X-ray pixel detectors with application to serial crystallography.
Sadri A, Hadian-Jazi M, Yefanov O, Galchenkova M, Kirkwood H, Mills G, Sikorski M, Letrun R, de Wijn R, Vakili M, Oberthuer D, Komadina D, Brehm W, Mancuso AP, Carnis J, Gelisio L, Chapman HN. Sadri A, et al. Among authors: kirkwood h. J Appl Crystallogr. 2022 Nov 21;55(Pt 6):1549-1561. doi: 10.1107/S1600576722009815. eCollection 2022 Dec 1. J Appl Crystallogr. 2022. PMID: 36570663 Free PMC article.
Initial observations of the femtosecond timing jitter at the European XFEL.
Kirkwood HJ, Letrun R, Tanikawa T, Liu J, Nakatsutsumi M, Emons M, Jezynski T, Palmer G, Lederer M, Bean R, Buck J, Di Dio Cafisio S, Graceffa R, Grünert J, Göde S, Höppner H, Kim Y, Konopkova Z, Mills G, Makita M, Pelka A, Preston TR, Sikorski M, Takem CMS, Giewekemeyer K, Chollet M, Vagovic P, Chapman HN, Mancuso AP, Sato T. Kirkwood HJ, et al. Opt Lett. 2019 Apr 1;44(7):1650-1653. doi: 10.1364/OL.44.001650. Opt Lett. 2019. PMID: 30933113
The Single Particles, Clusters and Biomolecules and Serial Femtosecond Crystallography instrument of the European XFEL: initial installation.
Mancuso AP, Aquila A, Batchelor L, Bean RJ, Bielecki J, Borchers G, Doerner K, Giewekemeyer K, Graceffa R, Kelsey OD, Kim Y, Kirkwood HJ, Legrand A, Letrun R, Manning B, Lopez Morillo L, Messerschmidt M, Mills G, Raabe S, Reimers N, Round A, Sato T, Schulz J, Signe Takem C, Sikorski M, Stern S, Thute P, Vagovič P, Weinhausen B, Tschentscher T. Mancuso AP, et al. J Synchrotron Radiat. 2019 May 1;26(Pt 3):660-676. doi: 10.1107/S1600577519003308. Epub 2019 Apr 12. J Synchrotron Radiat. 2019. PMID: 31074429 Free PMC article.
Time-resolved serial femtosecond crystallography at the European XFEL.
Pandey S, Bean R, Sato T, Poudyal I, Bielecki J, Cruz Villarreal J, Yefanov O, Mariani V, White TA, Kupitz C, Hunter M, Abdellatif MH, Bajt S, Bondar V, Echelmeier A, Doppler D, Emons M, Frank M, Fromme R, Gevorkov Y, Giovanetti G, Jiang M, Kim D, Kim Y, Kirkwood H, Klimovskaia A, Knoska J, Koua FHM, Letrun R, Lisova S, Maia L, Mazalova V, Meza D, Michelat T, Ourmazd A, Palmer G, Ramilli M, Schubert R, Schwander P, Silenzi A, Sztuk-Dambietz J, Tolstikova A, Chapman HN, Ros A, Barty A, Fromme P, Mancuso AP, Schmidt M. Pandey S, et al. Among authors: kirkwood h. Nat Methods. 2020 Jan;17(1):73-78. doi: 10.1038/s41592-019-0628-z. Epub 2019 Nov 18. Nat Methods. 2020. PMID: 31740816 Free PMC article.
Segmented flow generator for serial crystallography at the European X-ray free electron laser.
Echelmeier A, Cruz Villarreal J, Messerschmidt M, Kim D, Coe JD, Thifault D, Botha S, Egatz-Gomez A, Gandhi S, Brehm G, Conrad CE, Hansen DT, Madsen C, Bajt S, Meza-Aguilar JD, Oberthür D, Wiedorn MO, Fleckenstein H, Mendez D, Knoška J, Martin-Garcia JM, Hu H, Lisova S, Allahgholi A, Gevorkov Y, Ayyer K, Aplin S, Ginn HM, Graafsma H, Morgan AJ, Greiffenberg D, Klujev A, Laurus T, Poehlsen J, Trunk U, Mezza D, Schmidt B, Kuhn M, Fromme R, Sztuk-Dambietz J, Raab N, Hauf S, Silenzi A, Michelat T, Xu C, Danilevski C, Parenti A, Mekinda L, Weinhausen B, Mills G, Vagovic P, Kim Y, Kirkwood H, Bean R, Bielecki J, Stern S, Giewekemeyer K, Round AR, Schulz J, Dörner K, Grant TD, Mariani V, Barty A, Mancuso AP, Weierstall U, Spence JCH, Chapman HN, Zatsepin N, Fromme P, Kirian RA, Ros A. Echelmeier A, et al. Among authors: kirkwood h. Nat Commun. 2020 Sep 9;11(1):4511. doi: 10.1038/s41467-020-18156-7. Nat Commun. 2020. PMID: 32908128 Free PMC article.
Data reduction for serial crystallography using a robust peak finder.
Hadian-Jazi M, Sadri A, Barty A, Yefanov O, Galchenkova M, Oberthuer D, Komadina D, Brehm W, Kirkwood H, Mills G, de Wijn R, Letrun R, Kloos M, Vakili M, Gelisio L, Darmanin C, Mancuso AP, Chapman HN, Abbey B. Hadian-Jazi M, et al. Among authors: kirkwood h. J Appl Crystallogr. 2021 Sep 13;54(Pt 5):1360-1378. doi: 10.1107/S1600576721007317. eCollection 2021 Oct 1. J Appl Crystallogr. 2021. PMID: 34667447 Free PMC article.
Observation of substrate diffusion and ligand binding in enzyme crystals using high-repetition-rate mix-and-inject serial crystallography.
Pandey S, Calvey G, Katz AM, Malla TN, Koua FHM, Martin-Garcia JM, Poudyal I, Yang JH, Vakili M, Yefanov O, Zielinski KA, Bajt S, Awel S, Doerner K, Frank M, Gelisio L, Jernigan R, Kirkwood H, Kloos M, Koliyadu J, Mariani V, Miller MD, Mills G, Nelson G, Olmos JL Jr, Sadri A, Sato T, Tolstikova A, Xu W, Ourmazd A, Spence JCH, Schwander P, Barty A, Chapman HN, Fromme P, Mancuso AP, Phillips GN Jr, Bean R, Pollack L, Schmidt M. Pandey S, et al. Among authors: kirkwood h. IUCrJ. 2021 Sep 9;8(Pt 6):878-895. doi: 10.1107/S2052252521008125. eCollection 2021 Nov 1. IUCrJ. 2021. PMID: 34804542 Free PMC article.
Unsupervised learning approaches to characterizing heterogeneous samples using X-ray single-particle imaging.
Zhuang Y, Awel S, Barty A, Bean R, Bielecki J, Bergemann M, Daurer BJ, Ekeberg T, Estillore AD, Fangohr H, Giewekemeyer K, Hunter MS, Karnevskiy M, Kirian RA, Kirkwood H, Kim Y, Koliyadu J, Lange H, Letrun R, Lübke J, Mall A, Michelat T, Morgan AJ, Roth N, Samanta AK, Sato T, Shen Z, Sikorski M, Schulz F, Spence JCH, Vagovic P, Wollweber T, Worbs L, Xavier PL, Yefanov O, Maia FRNC, Horke DA, Küpper J, Loh ND, Mancuso AP, Chapman HN, Ayyer K. Zhuang Y, et al. Among authors: kirkwood h. IUCrJ. 2022 Jan 11;9(Pt 2):204-214. doi: 10.1107/S2052252521012707. eCollection 2022 Mar 1. IUCrJ. 2022. PMID: 35371510 Free PMC article.
A multi-million image Serial Femtosecond Crystallography dataset collected at the European XFEL.
Kirkwood HJ, de Wijn R, Mills G, Letrun R, Kloos M, Vakili M, Karnevskiy M, Ahmed K, Bean RJ, Bielecki J, Dall'Antonia F, Kim Y, Kim C, Koliyadu J, Round A, Sato T, Sikorski M, Vagovič P, Sztuk-Dambietz J, Mancuso AP. Kirkwood HJ, et al. Sci Data. 2022 Apr 12;9(1):161. doi: 10.1038/s41597-022-01266-w. Sci Data. 2022. PMID: 35414146 Free PMC article.
Shot-to-shot two-dimensional photon intensity diagnostics within megahertz pulse-trains at the European XFEL.
Guest TW, Bean R, Bielecki J, Birnsteinova S, Geloni G, Guetg M, Kammering R, Kirkwood HJ, Koch A, Paganin DM, van Riessen G, Vagovič P, de Wijn R, Mancuso AP, Abbey B. Guest TW, et al. J Synchrotron Radiat. 2022 Jul 1;29(Pt 4):939-946. doi: 10.1107/S1600577522005720. Epub 2022 Jun 8. J Synchrotron Radiat. 2022. PMID: 35787559 Free PMC article.
36 results