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Page 1
Phylotranscriptomic Analyses of Mycoheterotrophic Monocots Show a Continuum of Convergent Evolutionary Changes in Expressed Nuclear Genes From Three Independent Nonphotosynthetic Lineages.
Timilsena PR, Barrett CF, Piñeyro-Nelson A, Wafula EK, Ayyampalayam S, McNeal JR, Yukawa T, Givnish TJ, Graham SW, Pires JC, Davis JI, Ané C, Stevenson DW, Leebens-Mack J, Martínez-Salas E, Álvarez-Buylla ER, dePamphilis CW. Timilsena PR, et al. Among authors: pires jc. Genome Biol Evol. 2023 Jan 4;15(1):evac183. doi: 10.1093/gbe/evac183. Genome Biol Evol. 2023. PMID: 36582124 Free PMC article.
Phylogenomic resolution of order- and family-level monocot relationships using 602 single-copy nuclear genes and 1375 BUSCO genes.
Timilsena PR, Wafula EK, Barrett CF, Ayyampalayam S, McNeal JR, Rentsch JD, McKain MR, Heyduk K, Harkess A, Villegente M, Conran JG, Illing N, Fogliani B, Ané C, Pires JC, Davis JI, Zomlefer WB, Stevenson DW, Graham SW, Givnish TJ, Leebens-Mack J, dePamphilis CW. Timilsena PR, et al. Among authors: pires jc. Front Plant Sci. 2022 Nov 22;13:876779. doi: 10.3389/fpls.2022.876779. eCollection 2022. Front Plant Sci. 2022. PMID: 36483967 Free PMC article.
Global Brassicaceae phylogeny based on filtering of 1,000-gene dataset.
Hendriks KP, Kiefer C, Al-Shehbaz IA, Bailey CD, Hooft van Huysduynen A, Nikolov LA, Nauheimer L, Zuntini AR, German DA, Franzke A, Koch MA, Lysak MA, Toro-Núñez Ó, Özüdoğru B, Invernón VR, Walden N, Maurin O, Hay NM, Shushkov P, Mandáková T, Schranz ME, Thulin M, Windham MD, Rešetnik I, Španiel S, Ly E, Pires JC, Harkess A, Neuffer B, Vogt R, Bräuchler C, Rainer H, Janssens SB, Schmull M, Forrest A, Guggisberg A, Zmarzty S, Lepschi BJ, Scarlett N, Stauffer FW, Schönberger I, Heenan P, Baker WJ, Forest F, Mummenhoff K, Lens F. Hendriks KP, et al. Among authors: pires jc. Curr Biol. 2023 Oct 9;33(19):4052-4068.e6. doi: 10.1016/j.cub.2023.08.026. Epub 2023 Sep 1. Curr Biol. 2023. PMID: 37659415 Free article.
Allopolyploidy expanded gene content but not pangenomic variation in the hexaploid oilseed Camelina sativa.
Bird KA, Brock JR, Grabowski PP, Harder AM, Healy AL, Shu S, Barry K, Boston L, Daum C, Guo J, Lipzen A, Walstead R, Grimwood J, Schmutz J, Lu C, Comai L, McKay JK, Pires JC, Edger PP, Lovell JT, Kliebenstein DJ. Bird KA, et al. Among authors: pires jc. Genetics. 2025 Jan 8;229(1):1-44. doi: 10.1093/genetics/iyae183. Genetics. 2025. PMID: 39545504
178 results