Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Additional filters

Article Language

Species

Sex

Age

Other

Search Results

28 results

Filters applied: . Clear all
Results are displayed in a computed author sort order. The Publication Date timeline is not available.
Page 1
Accurate isoform discovery with IsoQuant using long reads.
Prjibelski AD, Mikheenko A, Joglekar A, Smetanin A, Jarroux J, Lapidus AL, Tilgner HU. Prjibelski AD, et al. Among authors: mikheenko a. Nat Biotechnol. 2023 Jul;41(7):915-918. doi: 10.1038/s41587-022-01565-y. Epub 2023 Jan 2. Nat Biotechnol. 2023. PMID: 36593406 Free PMC article.
Icarus: visualizer for de novo assembly evaluation.
Mikheenko A, Valin G, Prjibelski A, Saveliev V, Gurevich A. Mikheenko A, et al. Bioinformatics. 2016 Nov 1;32(21):3321-3323. doi: 10.1093/bioinformatics/btw379. Epub 2016 Jul 4. Bioinformatics. 2016. PMID: 27378299
Versatile genome assembly evaluation with QUAST-LG.
Mikheenko A, Prjibelski A, Saveliev V, Antipov D, Gurevich A. Mikheenko A, et al. Bioinformatics. 2018 Jul 1;34(13):i142-i150. doi: 10.1093/bioinformatics/bty266. Bioinformatics. 2018. PMID: 29949969 Free PMC article.
Extending rnaSPAdes functionality for hybrid transcriptome assembly.
Prjibelski AD, Puglia GD, Antipov D, Bushmanova E, Giordano D, Mikheenko A, Vitale D, Lapidus A. Prjibelski AD, et al. Among authors: mikheenko a. BMC Bioinformatics. 2020 Jul 24;21(Suppl 12):302. doi: 10.1186/s12859-020-03614-2. BMC Bioinformatics. 2020. PMID: 32703149 Free PMC article.
Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue.
Hardwick SA, Hu W, Joglekar A, Fan L, Collier PG, Foord C, Balacco J, Lanjewar S, Sampson MM, Koopmans F, Prjibelski AD, Mikheenko A, Belchikov N, Jarroux J, Lucas AB, Palkovits M, Luo W, Milner TA, Ndhlovu LC, Smit AB, Trojanowski JQ, Lee VMY, Fedrigo O, Sloan SA, Tombácz D, Ross ME, Jarvis E, Boldogkői Z, Gan L, Tilgner HU. Hardwick SA, et al. Among authors: mikheenko a. Nat Biotechnol. 2022 Jul;40(7):1082-1092. doi: 10.1038/s41587-022-01231-3. Epub 2022 Mar 7. Nat Biotechnol. 2022. PMID: 35256815 Free PMC article.
Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies.
Mc Cartney AM, Shafin K, Alonge M, Bzikadze AV, Formenti G, Fungtammasan A, Howe K, Jain C, Koren S, Logsdon GA, Miga KH, Mikheenko A, Paten B, Shumate A, Soto DC, Sović I, Wood JMD, Zook JM, Phillippy AM, Rhie A. Mc Cartney AM, et al. Among authors: mikheenko a. Nat Methods. 2022 Jun;19(6):687-695. doi: 10.1038/s41592-022-01440-3. Epub 2022 Mar 31. Nat Methods. 2022. PMID: 35361931 Free PMC article.
The structure, function and evolution of a complete human chromosome 8.
Logsdon GA, Vollger MR, Hsieh P, Mao Y, Liskovykh MA, Koren S, Nurk S, Mercuri L, Dishuck PC, Rhie A, de Lima LG, Dvorkina T, Porubsky D, Harvey WT, Mikheenko A, Bzikadze AV, Kremitzki M, Graves-Lindsay TA, Jain C, Hoekzema K, Murali SC, Munson KM, Baker C, Sorensen M, Lewis AM, Surti U, Gerton JL, Larionov V, Ventura M, Miga KH, Phillippy AM, Eichler EE. Logsdon GA, et al. Among authors: mikheenko a. Nature. 2021 May;593(7857):101-107. doi: 10.1038/s41586-021-03420-7. Epub 2021 Apr 7. Nature. 2021. PMID: 33828295 Free PMC article.
28 results