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Optimized Quantification of Intrahost Viral Diversity in SARS-CoV-2 and Influenza Virus Sequence Data.
Roder AE, Johnson K, Knoll M, Khalfan M, Wang B, Schultz-Cherry S, Banakis S, Kreitman A, Mederos C, Youn JH, Mercado R, Wang W, Ruchnewitz D, Samanovic MI, Mulligan MJ, Lassig M, Åuksza M, Das S, Gresham D, Ghedin E. Roder AE, et al. bioRxiv [Preprint]. 2022 Aug 16:2021.05.05.442873. doi: 10.1101/2021.05.05.442873. bioRxiv. 2022. Update in: mBio. 2023 Aug 31;14(4):e0104623. doi: 10.1128/mbio.01046-23 PMID: 36656775 Free PMC article. Updated. Preprint.
Host response: Pregnancy impairs flu defences.
Ghedin E, Schultz-Cherry S. Ghedin E, et al. Nat Microbiol. 2017 Apr 28;2:17077. doi: 10.1038/nmicrobiol.2017.77. Nat Microbiol. 2017. PMID: 28452981 No abstract available.
Optimized quantification of intra-host viral diversity in SARS-CoV-2 and influenza virus sequence data.
Roder AE, Johnson KEE, Knoll M, Khalfan M, Wang B, Schultz-Cherry S, Banakis S, Kreitman A, Mederos C, Youn JH, Mercado R, Wang W, Chung M, Ruchnewitz D, Samanovic MI, Mulligan MJ, Lässig M, Luksza M, Das S, Gresham D, Ghedin E. Roder AE, et al. mBio. 2023 Aug 31;14(4):e0104623. doi: 10.1128/mbio.01046-23. Epub 2023 Jun 30. mBio. 2023. PMID: 37389439 Free PMC article.
Host obesity impacts genetic variation in influenza A viral populations.
Knoll M, Honce R, Meliopoulos V, Segredo-Otero EA, Johnson KE, Schultz-Cherry S, Ghedin E, Gresham D. Knoll M, et al. Among authors: schultz cherry s. J Virol. 2024 Jun 13;98(6):e0177823. doi: 10.1128/jvi.01778-23. Epub 2024 May 24. J Virol. 2024. PMID: 38785423 Free PMC article.
Utility of nasal swabs for assessing mucosal immune responses towards SARS-CoV-2.
Roubidoux EK, Brigleb PH, Vegesana K, Souquette A, Whitt K, Freiden P; St. Jude Investigative Team; Green A, Thomas PG, McGargill MA, Wolf J, Schultz-Cherry S. Roubidoux EK, et al. bioRxiv [Preprint]. 2023 Jul 13:2023.07.12.548630. doi: 10.1101/2023.07.12.548630. bioRxiv. 2023. Update in: Sci Rep. 2023 Oct 19;13(1):17820. doi: 10.1038/s41598-023-44989-5 PMID: 37503213 Free PMC article. Updated. Preprint.
Defining the risk of SARS-CoV-2 variants on immune protection.
DeGrace MM, Ghedin E, Frieman MB, Krammer F, Grifoni A, Alisoltani A, Alter G, Amara RR, Baric RS, Barouch DH, Bloom JD, Bloyet LM, Bonenfant G, Boon ACM, Boritz EA, Bratt DL, Bricker TL, Brown L, Buchser WJ, Carreño JM, Cohen-Lavi L, Darling TL, Davis-Gardner ME, Dearlove BL, Di H, Dittmann M, Doria-Rose NA, Douek DC, Drosten C, Edara VV, Ellebedy A, Fabrizio TP, Ferrari G, Fischer WM, Florence WC, Fouchier RAM, Franks J, García-Sastre A, Godzik A, Gonzalez-Reiche AS, Gordon A, Haagmans BL, Halfmann PJ, Ho DD, Holbrook MR, Huang Y, James SL, Jaroszewski L, Jeevan T, Johnson RM, Jones TC, Joshi A, Kawaoka Y, Kercher L, Koopmans MPG, Korber B, Koren E, Koup RA, LeGresley EB, Lemieux JE, Liebeskind MJ, Liu Z, Livingston B, Logue JP, Luo Y, McDermott AB, McElrath MJ, Meliopoulos VA, Menachery VD, Montefiori DC, Mühlemann B, Munster VJ, Munt JE, Nair MS, Netzl A, Niewiadomska AM, O'Dell S, Pekosz A, Perlman S, Pontelli MC, Rockx B, Rolland M, Rothlauf PW, Sacharen S, Scheuermann RH, Schmidt SD, Schotsaert M, Schultz-Cherry S, Seder RA, Sedova M, Sette A, Shabman RS, Shen X, Shi PY, Shukla M, Simon V, Stumpf S, Sullivan NJ, Thackray LB, Theiler J, Thomas PG, Trifkovic S, Türeli S, Turn… See abstract for full author list ➔ DeGrace MM, et al. Nature. 2022 May;605(7911):640-652. doi: 10.1038/s41586-022-04690-5. Epub 2022 Mar 31. Nature. 2022. PMID: 35361968 Free PMC article. Review.
Astrovirus replication is dependent on induction of double membrane vesicles through a PI3K-dependent, LC3-independent pathway.
Bub T, Hargest V, Tan S, Smith M, Vazquez-Pagan A, Flerlage T, Brigleb PH, Meliopoulos V, Lindenbach B, Cortez V, Crawford JC, Schultz-Cherry S. Bub T, et al. bioRxiv [Preprint]. 2023 Apr 12:2023.04.11.536492. doi: 10.1101/2023.04.11.536492. bioRxiv. 2023. Update in: J Virol. 2023 Sep 28;97(9):e0102523. doi: 10.1128/jvi.01025-23 PMID: 37090568 Free PMC article. Updated. Preprint.
Diet-induced obesity impacts influenza disease severity and transmission dynamics in ferrets.
Meliopoulos V, Honce R, Livingston B, Hargest V, Freiden P, Lazure L, Brigleb PH, Karlsson E, Tillman H, Allen EK, Boyd D, Thomas PG, Schultz-Cherry S. Meliopoulos V, et al. bioRxiv [Preprint]. 2023 Sep 26:2023.09.26.558609. doi: 10.1101/2023.09.26.558609. bioRxiv. 2023. Update in: Sci Adv. 2024 May 10;10(19):eadk9137. doi: 10.1126/sciadv.adk9137 PMID: 37808835 Free PMC article. Updated. Preprint.
Intraductal infection with H5N1 clade 2.3.4.4b influenza virus.
Roubidoux EK, Meliopoulos V, Livingston B, Brigleb PH, Schultz-Cherry S. Roubidoux EK, et al. Among authors: schultz cherry s. bioRxiv [Preprint]. 2024 Nov 2:2024.11.01.621606. doi: 10.1101/2024.11.01.621606. bioRxiv. 2024. PMID: 39554179 Free PMC article. Preprint.
241 results