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Oligonucleotide-directed proximity-interactome mapping (O-MAP): A unified method for discovering RNA-interacting proteins, transcripts and genomic loci in situ.
Tsue AF, Kania EE, Lei DQ, Fields R, McGann CD, Hershberg E, Deng X, Kihiu M, Ong SE, Disteche CM, Kugel S, Beliveau BJ, Schweppe DK, Shechner DM. Tsue AF, et al. Among authors: deng x. bioRxiv [Preprint]. 2023 Jan 20:2023.01.19.524825. doi: 10.1101/2023.01.19.524825. bioRxiv. 2023. PMID: 36711823 Free PMC article. Preprint.
Decoding dosage compensation.
Deng X, Disteche CM. Deng X, et al. Genome Biol. 2007;8(2):204. doi: 10.1186/gb-2007-8-2-204. Genome Biol. 2007. PMID: 17328790 Free PMC article. Review.
Mapping 3D genome architecture through in situ DNase Hi-C.
Ramani V, Cusanovich DA, Hause RJ, Ma W, Qiu R, Deng X, Blau CA, Disteche CM, Noble WS, Shendure J, Duan Z. Ramani V, et al. Among authors: deng x. Nat Protoc. 2016 Nov;11(11):2104-21. doi: 10.1038/nprot.2016.126. Epub 2016 Sep 29. Nat Protoc. 2016. PMID: 27685100 Free PMC article.
A single-cell transcriptional timelapse of mouse embryonic development, from gastrula to pup.
Qiu C, Martin BK, Welsh IC, Daza RM, Le TM, Huang X, Nichols EK, Taylor ML, Fulton O, O'Day DR, Gomes AR, Ilcisin S, Srivatsan S, Deng X, Disteche CM, Noble WS, Hamazaki N, Moens CB, Kimelman D, Cao J, Schier AF, Spielmann M, Murray SA, Trapnell C, Shendure J. Qiu C, et al. Among authors: deng x. bioRxiv [Preprint]. 2023 Apr 5:2023.04.05.535726. doi: 10.1101/2023.04.05.535726. bioRxiv. 2023. Update in: Nature. 2024 Feb;626(8001):1084-1093. doi: 10.1038/s41586-024-07069-w PMID: 37066300 Free PMC article. Updated. Preprint.
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