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Oligonucleotide-directed proximity-interactome mapping (O-MAP): A unified method for discovering RNA-interacting proteins, transcripts and genomic loci in situ.
Tsue AF, Kania EE, Lei DQ, Fields R, McGann CD, Hershberg E, Deng X, Kihiu M, Ong SE, Disteche CM, Kugel S, Beliveau BJ, Schweppe DK, Shechner DM. Tsue AF, et al. Among authors: mcgann cd. bioRxiv [Preprint]. 2023 Jan 20:2023.01.19.524825. doi: 10.1101/2023.01.19.524825. bioRxiv. 2023. PMID: 36711823 Free PMC article. Preprint.
DNA O-MAP uncovers the molecular neighborhoods associated with specific genomic loci.
Liu Y, McGann CD, Krebs M, Perkins TA Jr, Fields R, Camplisson CK, Nwizugbo DZ, Hsu C, Avanessian SC, Tsue AF, Kania EE, Shechner DM, Beliveau BJ, Schweppe DK. Liu Y, et al. Among authors: mcgann cd. bioRxiv [Preprint]. 2024 Jul 29:2024.07.24.604987. doi: 10.1101/2024.07.24.604987. bioRxiv. 2024. PMID: 39091817 Free PMC article. Preprint.
The proteomic landscape and temporal dynamics of mammalian gastruloid development.
Garge RK, Lynch V, Fields R, Casadei S, Best S, Stone J, Snyder M, McGann CD, Shendure J, Starita LM, Hamazaki N, Schweppe DK. Garge RK, et al. Among authors: mcgann cd. bioRxiv [Preprint]. 2024 Sep 7:2024.09.05.609098. doi: 10.1101/2024.09.05.609098. bioRxiv. 2024. PMID: 39282277 Free PMC article. Preprint.
High-throughput identification of calcium-regulated proteins across diverse proteomes.
Locke TM, Fields R, Gizinski H, Otto GM, MacEwen MJS, Rusnac DV, He P, Shechner DM, McGann CD, Berg MD, Villen J, Sancak Y, Schweppe DK. Locke TM, et al. Among authors: mcgann cd. Cell Rep. 2024 Nov 26;43(11):114879. doi: 10.1016/j.celrep.2024.114879. Epub 2024 Oct 18. Cell Rep. 2024. PMID: 39425928 Free article.
Real-Time Spectral Library Matching for Sample Multiplexed Quantitative Proteomics.
McGann CD, Barshop WD, Canterbury JD, Lin C, Gabriel W, Huang J, Bergen D, Zabrouskov V, Melani RD, Wilhelm M, McAlister GC, Schweppe DK. McGann CD, et al. J Proteome Res. 2023 Sep 1;22(9):2836-2846. doi: 10.1021/acs.jproteome.3c00085. Epub 2023 Aug 9. J Proteome Res. 2023. PMID: 37557900 Free PMC article.
Systematic discovery and validation of T cell targets directed against oncogenic KRAS mutations.
Choi J, Goulding SP, Conn BP, McGann CD, Dietze JL, Kohler J, Lenkala D, Boudot A, Rothenberg DA, Turcott PJ, Srouji JR, Foley KC, Rooney MS, van Buuren MM, Gaynor RB, Abelin JG, Addona TA, Juneja VR. Choi J, et al. Among authors: mcgann cd. Cell Rep Methods. 2021 Sep 16;1(5):100084. doi: 10.1016/j.crmeth.2021.100084. eCollection 2021 Sep 27. Cell Rep Methods. 2021. PMID: 35474673 Free PMC article.
Defining HLA-II ligand processing and binding rules with mass spectrometry enhances cancer epitope prediction.
Abelin JG, Harjanto D, Malloy M, Suri P, Colson T, Goulding SP, Creech AL, Serrano LR, Nasir G, Nasrullah Y, McGann CD, Velez D, Ting YS, Poran A, Rothenberg DA, Chhangawala S, Rubinsteyn A, Hammerbacher J, Gaynor RB, Fritsch EF, Greshock J, Oslund RC, Barthelme D, Addona TA, Arieta CM, Rooney MS. Abelin JG, et al. Among authors: mcgann cd. Immunity. 2021 Feb 9;54(2):388. doi: 10.1016/j.immuni.2020.12.005. Immunity. 2021. PMID: 33567264 Free article. No abstract available.
11 results