Kutmon M - Search Results

1

Systems Biology in ELIXIR: modelling in the spotlight.

Martins Dos Santos V, Anton M, Szomolay B, Ostaszewski M, Arts I, Benfeitas R, Dominguez Del Angel V, Domínguez-Romero E, Ferk P, Fey D, Goble C, Golebiewski M, Gruden K, Heil KF, Hermjakob H, Kahlem P, Klapa MI, Koehorst J, Kolodkin A, Kutmon M, Leskošek B, Moretti S, Müller W, Pagni M, Rezen T, Rocha M, Rozman D, Šafránek D, T Scott W, Sheriff RSM, Suarez Diez M, Van Steen K, Westerhoff HV, Wittig U, Wolstencroft K, Zupanic A, Evelo CT, Hancock JM. Martins Dos Santos V, et al. Among authors: kutmon m. F1000Res. 2022 Nov 7;11:ELIXIR-1265. doi: 10.12688/f1000research.126734.2. eCollection 2022. F1000Res. 2022. PMID: 36742342 Free PMC article.

2

WikiPathways: building research communities on biological pathways.

Kelder T, van Iersel MP, Hanspers K, Kutmon M, Conklin BR, Evelo CT, Pico AR. Kelder T, et al. Among authors: kutmon m. Nucleic Acids Res. 2012 Jan;40(Database issue):D1301-7. doi: 10.1093/nar/gkr1074. Epub 2011 Nov 16. Nucleic Acids Res. 2012. PMID: 22096230 Free PMC article.

3

A pathway approach to investigate the function and regulation of SREBPs.

Daemen S, Kutmon M, Evelo CT. Daemen S, et al. Among authors: kutmon m. Genes Nutr. 2013 May;8(3):289-300. doi: 10.1007/s12263-013-0342-x. Epub 2013 Mar 21. Genes Nutr. 2013. PMID: 23516131 Free PMC article.

4

CyTargetLinker: a cytoscape app to integrate regulatory interactions in network analysis.

Kutmon M, Kelder T, Mandaviya P, Evelo CT, Coort SL. Kutmon M, et al. PLoS One. 2013 Dec 5;8(12):e82160. doi: 10.1371/journal.pone.0082160. eCollection 2013. PLoS One. 2013. PMID: 24340000 Free PMC article.

5

Integrated visualization of a multi-omics study of starvation in mouse intestine.

van Iersel MP, Sokolović M, Lenaerts K, Kutmon M, Bouwman FG, Lamers WH, Mariman EC, Evelo CT. van Iersel MP, et al. Among authors: kutmon m. J Integr Bioinform. 2014 Mar 28;11(1):235. doi: 10.2390/biecoll-jib-2014-235. J Integr Bioinform. 2014. PMID: 24675236 Free article.

6

WikiPathways App for Cytoscape: Making biological pathways amenable to network analysis and visualization.

Kutmon M, Lotia S, Evelo CT, Pico AR. Kutmon M, et al. F1000Res. 2014 Jul 1;3:152. doi: 10.12688/f1000research.4254.2. eCollection 2014. F1000Res. 2014. PMID: 25254103 Free PMC article.

7

A network biology workflow to study transcriptomics data of the diabetic liver.

Kutmon M, Evelo CT, Coort SL. Kutmon M, et al. BMC Genomics. 2014 Nov 15;15(1):971. doi: 10.1186/1471-2164-15-971. BMC Genomics. 2014. PMID: 25399255 Free PMC article.

8

PathVisio 3: an extendable pathway analysis toolbox.

Kutmon M, van Iersel MP, Bohler A, Kelder T, Nunes N, Pico AR, Evelo CT. Kutmon M, et al. PLoS Comput Biol. 2015 Feb 23;11(2):e1004085. doi: 10.1371/journal.pcbi.1004085. eCollection 2015 Feb. PLoS Comput Biol. 2015. PMID: 25706687 Free PMC article.

9

Integrative network-based analysis of mRNA and microRNA expression in 1,25-dihydroxyvitamin D3-treated cancer cells.

Kutmon M, Coort SL, de Nooijer K, Lemmens C, Evelo CT. Kutmon M, et al. Genes Nutr. 2015 Sep;10(5):35. doi: 10.1007/s12263-015-0484-0. Epub 2015 Aug 15. Genes Nutr. 2015. PMID: 26276506 Free PMC article.

10

Automatically visualise and analyse data on pathways using PathVisioRPC from any programming environment.

Bohler A, Eijssen LM, van Iersel MP, Leemans C, Willighagen EL, Kutmon M, Jaillard M, Evelo CT. Bohler A, et al. Among authors: kutmon m. BMC Bioinformatics. 2015 Aug 23;16(1):267. doi: 10.1186/s12859-015-0708-8. BMC Bioinformatics. 2015. PMID: 26298294 Free PMC article.

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