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The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology.
Ballard JWO, Field MA, Edwards RJ, Wilson LAB, Koungoulos LG, Rosen BD, Chernoff B, Dudchenko O, Omer A, Keilwagen J, Skvortsova K, Bogdanovic O, Chan E, Zammit R, Hayes V, Aiden EL. Ballard JWO, et al. Among authors: bogdanovic o. bioRxiv [Preprint]. 2023 Jan 27:2023.01.26.525801. doi: 10.1101/2023.01.26.525801. bioRxiv. 2023. Update in: Gigascience. 2023 Mar 20;12:giad018. doi: 10.1093/gigascience/giad018. PMID: 36747621 Free PMC article. Updated. Preprint.
Functions and mechanisms of epigenetic inheritance in animals.
Skvortsova K, Iovino N, Bogdanović O. Skvortsova K, et al. Among authors: bogdanovic o. Nat Rev Mol Cell Biol. 2018 Dec;19(12):774-790. doi: 10.1038/s41580-018-0074-2. Nat Rev Mol Cell Biol. 2018. PMID: 30425324 Review.
Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C.
Field MA, Rosen BD, Dudchenko O, Chan EKF, Minoche AE, Edwards RJ, Barton K, Lyons RJ, Tuipulotu DE, Hayes VM, D Omer A, Colaric Z, Keilwagen J, Skvortsova K, Bogdanovic O, Smith MA, Aiden EL, Smith TPL, Zammit RA, Ballard JWO. Field MA, et al. Among authors: bogdanovic o. Gigascience. 2020 Apr 1;9(4):giaa027. doi: 10.1093/gigascience/giaa027. Gigascience. 2020. PMID: 32236524 Free PMC article.
Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome.
Edwards RJ, Field MA, Ferguson JM, Dudchenko O, Keilwagen J, Rosen BD, Johnson GS, Rice ES, Hillier D, Hammond JM, Towarnicki SG, Omer A, Khan R, Skvortsova K, Bogdanovic O, Zammit RA, Aiden EL, Warren WC, Ballard JWO. Edwards RJ, et al. Among authors: bogdanovic o. BMC Genomics. 2021 Mar 16;22(1):188. doi: 10.1186/s12864-021-07493-6. BMC Genomics. 2021. PMID: 33726677 Free PMC article.
The Australian dingo is an early offshoot of modern breed dogs.
Field MA, Yadav S, Dudchenko O, Esvaran M, Rosen BD, Skvortsova K, Edwards RJ, Keilwagen J, Cochran BJ, Manandhar B, Bustamante S, Rasmussen JA, Melvin RG, Chernoff B, Omer A, Colaric Z, Chan EKF, Minoche AE, Smith TPL, Gilbert MTP, Bogdanovic O, Zammit RA, Thomas T, Aiden EL, Ballard JWO. Field MA, et al. Among authors: bogdanovic o. Sci Adv. 2022 Apr 22;8(16):eabm5944. doi: 10.1126/sciadv.abm5944. Epub 2022 Apr 22. Sci Adv. 2022. PMID: 35452284 Free PMC article.
The Australasian dingo archetype: de novo chromosome-length genome assembly, DNA methylome, and cranial morphology.
Ballard JWO, Field MA, Edwards RJ, Wilson LAB, Koungoulos LG, Rosen BD, Chernoff B, Dudchenko O, Omer A, Keilwagen J, Skvortsova K, Bogdanovic O, Chan E, Zammit R, Hayes V, Aiden EL. Ballard JWO, et al. Among authors: bogdanovic o. Gigascience. 2023 Mar 20;12:giad018. doi: 10.1093/gigascience/giad018. Epub 2023 Mar 28. Gigascience. 2023. PMID: 36994871 Free PMC article.
DNA Hypermethylation Encroachment at CpG Island Borders in Cancer Is Predisposed by H3K4 Monomethylation Patterns.
Skvortsova K, Masle-Farquhar E, Luu PL, Song JZ, Qu W, Zotenko E, Gould CM, Du Q, Peters TJ, Colino-Sanguino Y, Pidsley R, Nair SS, Khoury A, Smith GC, Miosge LA, Reed JH, Kench JG, Rubin MA, Horvath L, Bogdanovic O, Lim SM, Polo JM, Goodnow CC, Stirzaker C, Clark SJ. Skvortsova K, et al. Among authors: bogdanovic o. Cancer Cell. 2019 Feb 11;35(2):297-314.e8. doi: 10.1016/j.ccell.2019.01.004. Cancer Cell. 2019. PMID: 30753827 Free article.
Evolution of DNA Methylome Diversity in Eukaryotes.
de Mendoza A, Lister R, Bogdanovic O. de Mendoza A, et al. Among authors: bogdanovic o. J Mol Biol. 2020 Mar 13;432(6):1687-1705. doi: 10.1016/j.jmb.2019.11.003. Epub 2019 Nov 11. J Mol Biol. 2020. PMID: 31726061 Review.
60 results