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Rapid Lineage Assignment of Severe Acute Respiratory Syndrome Coronavirus 2 Cases through Automated Library Preparation, Sequencing, and Bioinformatic Analysis.
Gorzalski AJ, Kerwin H, Verma S, Hess DC, Sevinsky J, Libuit K, Vlasova-St Louis I, Siao D, Siao L, Buñuel D, Van Hooser S, Pandori MW. Gorzalski AJ, et al. Among authors: hess dc. J Mol Diagn. 2023 Apr;25(4):191-196. doi: 10.1016/j.jmoldx.2023.01.005. Epub 2023 Feb 7. J Mol Diagn. 2023. PMID: 36754279 Free PMC article.
GAMBIT (Genomic Approximation Method for Bacterial Identification and Tracking): A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
Lumpe J, Gumbleton L, Gorzalski A, Libuit K, Varghese V, Lloyd T, Tadros F, Arsimendi T, Wagner E, Stephens C, Sevinsky J, Hess D, Pandori M. Lumpe J, et al. PLoS One. 2023 Feb 16;18(2):e0277575. doi: 10.1371/journal.pone.0277575. eCollection 2023. PLoS One. 2023. PMID: 36795668 Free PMC article.
The use of whole-genome sequencing and development of bioinformatics to monitor overlapping outbreaks of Candida auris in southern Nevada.
Gorzalski A, Ambrosio FJ 3rd, Massic L, Scribner MR, Siao DD, Hua C, Dykema P, Schneider E, Njoku C, Libuit K, Sevinsky JR, Van Hooser S, Pandori M, Hess D. Gorzalski A, et al. Front Public Health. 2023 Jul 13;11:1198189. doi: 10.3389/fpubh.2023.1198189. eCollection 2023. Front Public Health. 2023. PMID: 37522005 Free PMC article.
TheiaEuk: a species-agnostic bioinformatics workflow for fungal genomic characterization.
Ambrosio FJ 3rd, Scribner MR, Wright SM, Otieno JR, Doughty EL, Gorzalski A, Siao DD, Killian S, Hua C, Schneider E, Tran M, Varghese V, Libuit KG, Pandori M, Sevinsky JR, Hess D. Ambrosio FJ 3rd, et al. Front Public Health. 2023 Aug 1;11:1198213. doi: 10.3389/fpubh.2023.1198213. eCollection 2023. Front Public Health. 2023. PMID: 37593727 Free PMC article.
246 results