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Integrative analysis of multimodal mass spectrometry data in MZmine 3.
Schmid R, Heuckeroth S, Korf A, Smirnov A, Myers O, Dyrlund TS, Bushuiev R, Murray KJ, Hoffmann N, Lu M, Sarvepalli A, Zhang Z, Fleischauer M, Dührkop K, Wesner M, Hoogstra SJ, Rudt E, Mokshyna O, Brungs C, Ponomarov K, Mutabdžija L, Damiani T, Pudney CJ, Earll M, Helmer PO, Fallon TR, Schulze T, Rivas-Ubach A, Bilbao A, Richter H, Nothias LF, Wang M, Orešič M, Weng JK, Böcker S, Jeibmann A, Hayen H, Karst U, Dorrestein PC, Petras D, Du X, Pluskal T. Schmid R, et al. Among authors: bushuiev r. Nat Biotechnol. 2023 Apr;41(4):447-449. doi: 10.1038/s41587-023-01690-2. Nat Biotechnol. 2023. PMID: 36859716 Free PMC article. No abstract available.
MassSpecGym: A benchmark for the discovery and identification of molecules.
Bushuiev R, Bushuiev A, de Jonge NF, Young A, Kretschmer F, Samusevich R, Heirman J, Wang F, Zhang L, Dührkop K, Ludwig M, Haupt NA, Kalia A, Brungs C, Schmid R, Greiner R, Wang B, Wishart DS, Liu LP, Rousu J, Bittremieux W, Rost H, Mak TD, Hassoun S, Huber F, van der Hooft JJJ, Stravs MA, Böcker S, Sivic J, Pluskal T. Bushuiev R, et al. ArXiv [Preprint]. 2024 Oct 30:arXiv:2410.23326v1. ArXiv. 2024. PMID: 39575121 Free PMC article. Preprint.