Chen Z - Search Results

1

ResNetKhib: a novel cell type-specific tool for predicting lysine 2-hydroxyisobutylation sites via transfer learning.

Jia X, Zhao P, Li F, Qin Z, Ren H, Li J, Miao C, Zhao Q, Akutsu T, Dou G, Chen Z, Song J. Jia X, et al. Among authors: chen z. Brief Bioinform. 2023 Mar 19;24(2):bbad063. doi: 10.1093/bib/bbad063. Brief Bioinform. 2023. PMID: 36880172 Free PMC article.

2

Predicting residue-residue contacts and helix-helix interactions in transmembrane proteins using an integrative feature-based random forest approach.

Wang XF, Chen Z, Wang C, Yan RX, Zhang Z, Song J. Wang XF, et al. Among authors: chen z. PLoS One. 2011;6(10):e26767. doi: 10.1371/journal.pone.0026767. Epub 2011 Oct 28. PLoS One. 2011. PMID: 22046350 Free PMC article.

3

hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties.

Chen Z, Zhou Y, Song J, Zhang Z. Chen Z, et al. Biochim Biophys Acta. 2013 Aug;1834(8):1461-7. doi: 10.1016/j.bbapap.2013.04.006. Epub 2013 Apr 19. Biochim Biophys Acta. 2013. PMID: 23603789

4

ZincExplorer: an accurate hybrid method to improve the prediction of zinc-binding sites from protein sequences.

Chen Z, Wang Y, Zhai YF, Song J, Zhang Z. Chen Z, et al. Mol Biosyst. 2013 Sep;9(9):2213-22. doi: 10.1039/c3mb70100j. Mol Biosyst. 2013. PMID: 23861030

5

Towards more accurate prediction of ubiquitination sites: a comprehensive review of current methods, tools and features.

Chen Z, Zhou Y, Zhang Z, Song J. Chen Z, et al. Brief Bioinform. 2015 Jul;16(4):640-57. doi: 10.1093/bib/bbu031. Epub 2014 Sep 10. Brief Bioinform. 2015. PMID: 25212598 Review.

6

Computational characterization of parallel dimeric and trimeric coiled-coils using effective amino acid indices.

Li C, Wang XF, Chen Z, Zhang Z, Song J. Li C, et al. Among authors: chen z. Mol Biosyst. 2015 Feb;11(2):354-60. doi: 10.1039/c4mb00569d. Epub 2014 Dec 1. Mol Biosyst. 2015. PMID: 25435395

7

iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences.

Chen Z, Zhao P, Li F, Leier A, Marquez-Lago TT, Wang Y, Webb GI, Smith AI, Daly RJ, Chou KC, Song J. Chen Z, et al. Bioinformatics. 2018 Jul 15;34(14):2499-2502. doi: 10.1093/bioinformatics/bty140. Bioinformatics. 2018. PMID: 29528364 Free PMC article.

8

Large-scale comparative assessment of computational predictors for lysine post-translational modification sites.

Chen Z, Liu X, Li F, Li C, Marquez-Lago T, Leier A, Akutsu T, Webb GI, Xu D, Smith AI, Li L, Chou KC, Song J. Chen Z, et al. Brief Bioinform. 2019 Nov 27;20(6):2267-2290. doi: 10.1093/bib/bby089. Brief Bioinform. 2019. PMID: 30285084 Free PMC article. Review.

9

iLearn: an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data.

Chen Z, Zhao P, Li F, Marquez-Lago TT, Leier A, Revote J, Zhu Y, Powell DR, Akutsu T, Webb GI, Chou KC, Smith AI, Daly RJ, Li J, Song J. Chen Z, et al. Brief Bioinform. 2020 May 21;21(3):1047-1057. doi: 10.1093/bib/bbz041. Brief Bioinform. 2020. PMID: 31067315

10

Comprehensive review and assessment of computational methods for predicting RNA post-transcriptional modification sites from RNA sequences.

Chen Z, Zhao P, Li F, Wang Y, Smith AI, Webb GI, Akutsu T, Baggag A, Bensmail H, Song J. Chen Z, et al. Brief Bioinform. 2020 Sep 25;21(5):1676-1696. doi: 10.1093/bib/bbz112. Brief Bioinform. 2020. PMID: 31714956 Review.

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