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Matrix and analysis metadata standards (MAMS) to facilitate harmonization and reproducibility of single-cell data.
Wang Y, Sarfraz I, Teh WK, Sokolov A, Herb BR, Creasy HH, Virshup I, Dries R, Degatano K, Mahurkar A, Schnell DJ, Madrigal P, Hilton J, Gehlenborg N, Tickle T, Campbell JD. Wang Y, et al. Among authors: schnell dj. bioRxiv [Preprint]. 2023 Mar 7:2023.03.06.531314. doi: 10.1101/2023.03.06.531314. bioRxiv. 2023. Update in: Genome Biol. 2024 Aug 1;25(1):205. doi: 10.1186/s13059-024-03349-w PMID: 36945543 Free PMC article. Updated. Preprint.
MAMS: matrix and analysis metadata standards to facilitate harmonization and reproducibility of single-cell data.
Sarfraz I, Wang Y, Shastry A, Teh WK, Sokolov A, Herb BR, Creasy HH, Virshup I, Dries R, Degatano K, Mahurkar A, Schnell DJ, Madrigal P, Hilton J, Gehlenborg N, Tickle T, Campbell JD. Sarfraz I, et al. Among authors: schnell dj. Genome Biol. 2024 Aug 1;25(1):205. doi: 10.1186/s13059-024-03349-w. Genome Biol. 2024. PMID: 39090672 Free PMC article.
LungMAP Portal Ecosystem: Systems-level Exploration of the Lung.
Gaddis N, Fortriede J, Guo M, Bardes EE, Kouril M, Tabar S, Burns K, Ardini-Poleske ME, Loos S, Schnell D, Jin K, Iyer B, Du Y, Huo BX, Bhattacharjee A, Korte J, Munshi R, Smith V, Herbst A, Kitzmiller JA, Clair GC, Carson JP, Adkins J, Morrisey EE, Pryhuber GS, Misra R, Whitsett JA, Sun X, Heathorn T, Paten B, Prasath VBS, Xu Y, Tickle T, Aronow BJ, Salomonis N. Gaddis N, et al. Am J Respir Cell Mol Biol. 2024 Feb;70(2):129-139. doi: 10.1165/rcmb.2022-0165OC. Am J Respir Cell Mol Biol. 2024. PMID: 36413377 Free PMC article.
An immunophenotype-coupled transcriptomic atlas of human hematopoietic progenitors.
Zhang X, Song B, Carlino MJ, Li G, Ferchen K, Chen M, Thompson EN, Kain BN, Schnell D, Thakkar K, Kouril M, Jin K, Hay SB, Sen S, Bernardicius D, Ma S, Bennett SN, Croteau J, Salvatori O, Lye MH, Gillen AE, Jordan CT, Singh H, Krause DS, Salomonis N, Grimes HL. Zhang X, et al. Nat Immunol. 2024 Apr;25(4):703-715. doi: 10.1038/s41590-024-01782-4. Epub 2024 Mar 21. Nat Immunol. 2024. PMID: 38514887 Free PMC article.
Retinoid X receptor promotes hematopoietic stem cell fitness and quiescence and preserves hematopoietic homeostasis.
Menéndez-Gutiérrez MP, Porcuna J, Nayak R, Paredes A, Niu H, Núñez V, Paranjpe A, Gómez MJ, Bhattacharjee A, Schnell DJ, Sánchez-Cabo F, Welch JS, Salomonis N, Cancelas JA, Ricote M. Menéndez-Gutiérrez MP, et al. Among authors: schnell dj. Blood. 2023 Feb 9;141(6):592-608. doi: 10.1182/blood.2022016832. Blood. 2023. PMID: 36347014 Free PMC article.
A chloroplast protein atlas reveals punctate structures and spatial organization of biosynthetic pathways.
Wang L, Patena W, Van Baalen KA, Xie Y, Singer ER, Gavrilenko S, Warren-Williams M, Han L, Harrigan HR, Hartz LD, Chen V, Ton VTNP, Kyin S, Shwe HH, Cahn MH, Wilson AT, Onishi M, Hu J, Schnell DJ, McWhite CD, Jonikas MC. Wang L, et al. Among authors: schnell dj. Cell. 2023 Aug 3;186(16):3499-3518.e14. doi: 10.1016/j.cell.2023.06.008. Epub 2023 Jul 11. Cell. 2023. PMID: 37437571 Free article.
104 results