Setty M - Search Results

1

SEACells infers transcriptional and epigenomic cellular states from single-cell genomics data.

Persad S, Choo ZN, Dien C, Sohail N, Masilionis I, Chaligné R, Nawy T, Brown CC, Sharma R, Pe'er I, Setty M, Pe'er D. Persad S, et al. Among authors: setty m. Nat Biotechnol. 2023 Dec;41(12):1746-1757. doi: 10.1038/s41587-023-01716-9. Epub 2023 Mar 27. Nat Biotechnol. 2023. PMID: 36973557 Free PMC article.

2

Genomic safe harbors permit high β-globin transgene expression in thalassemia induced pluripotent stem cells.

Papapetrou EP, Lee G, Malani N, Setty M, Riviere I, Tirunagari LM, Kadota K, Roth SL, Giardina P, Viale A, Leslie C, Bushman FD, Studer L, Sadelain M. Papapetrou EP, et al. Among authors: setty m. Nat Biotechnol. 2011 Jan;29(1):73-8. doi: 10.1038/nbt.1717. Epub 2010 Dec 12. Nat Biotechnol. 2011. PMID: 21151124 Free PMC article.

3

HLA type inference via haplotypes identical by descent.

Setty MN, Gusev A, Pe'er I. Setty MN, et al. J Comput Biol. 2011 Mar;18(3):483-93. doi: 10.1089/cmb.2010.0258. J Comput Biol. 2011. PMID: 21385049

4

Wishbone identifies bifurcating developmental trajectories from single-cell data.

Setty M, Tadmor MD, Reich-Zeliger S, Angel O, Salame TM, Kathail P, Choi K, Bendall S, Friedman N, Pe'er D. Setty M, et al. Nat Biotechnol. 2016 Jun;34(6):637-45. doi: 10.1038/nbt.3569. Epub 2016 May 2. Nat Biotechnol. 2016. PMID: 27136076 Free PMC article.

5

Epigenomic-Guided Mass Cytometry Profiling Reveals Disease-Specific Features of Exhausted CD8 T Cells.

Bengsch B, Ohtani T, Khan O, Setty M, Manne S, O'Brien S, Gherardini PF, Herati RS, Huang AC, Chang KM, Newell EW, Bovenschen N, Pe'er D, Albelda SM, Wherry EJ. Bengsch B, et al. Among authors: setty m. Immunity. 2018 May 15;48(5):1029-1045.e5. doi: 10.1016/j.immuni.2018.04.026. Immunity. 2018. PMID: 29768164 Free PMC article.

6

Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment.

Azizi E, Carr AJ, Plitas G, Cornish AE, Konopacki C, Prabhakaran S, Nainys J, Wu K, Kiseliovas V, Setty M, Choi K, Fromme RM, Dao P, McKenney PT, Wasti RC, Kadaveru K, Mazutis L, Rudensky AY, Pe'er D. Azizi E, et al. Among authors: setty m. Cell. 2018 Aug 23;174(5):1293-1308.e36. doi: 10.1016/j.cell.2018.05.060. Epub 2018 Jun 28. Cell. 2018. PMID: 29961579 Free PMC article.

7

Characterization of cell fate probabilities in single-cell data with Palantir.

Setty M, Kiseliovas V, Levine J, Gayoso A, Mazutis L, Pe'er D. Setty M, et al. Nat Biotechnol. 2019 Apr;37(4):451-460. doi: 10.1038/s41587-019-0068-4. Epub 2019 Mar 21. Nat Biotechnol. 2019. PMID: 30899105 Free PMC article.

8

Negative Co-stimulation Constrains T Cell Differentiation by Imposing Boundaries on Possible Cell States.

Wei SC, Sharma R, Anang NAS, Levine JH, Zhao Y, Mancuso JJ, Setty M, Sharma P, Wang J, Pe'er D, Allison JP. Wei SC, et al. Among authors: setty m. Immunity. 2019 Apr 16;50(4):1084-1098.e10. doi: 10.1016/j.immuni.2019.03.004. Epub 2019 Mar 26. Immunity. 2019. PMID: 30926234 Free PMC article.

9

The emergent landscape of the mouse gut endoderm at single-cell resolution.

Nowotschin S, Setty M, Kuo YY, Liu V, Garg V, Sharma R, Simon CS, Saiz N, Gardner R, Boutet SC, Church DM, Hoodless PA, Hadjantonakis AK, Pe'er D. Nowotschin S, et al. Among authors: setty m. Nature. 2019 May;569(7756):361-367. doi: 10.1038/s41586-019-1127-1. Epub 2019 Apr 8. Nature. 2019. PMID: 30959515 Free PMC article.

10

Author Correction: Characterization of cell fate probabilities in single-cell data with Palantir.

Setty M, Kiseliovas V, Levine J, Gayoso A, Mazutis L, Pe'er D. Setty M, et al. Nat Biotechnol. 2019 Oct;37(10):1237. doi: 10.1038/s41587-019-0282-0. Nat Biotechnol. 2019. PMID: 31534198

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