Chen D - Search Results

1

Asymmetric gene expression and cell-type-specific regulatory networks in the root of bread wheat revealed by single-cell multiomics analysis.

Zhang L, He C, Lai Y, Wang Y, Kang L, Liu A, Lan C, Su H, Gao Y, Li Z, Yang F, Li Q, Mao H, Chen D, Chen W, Kaufmann K, Yan W. Zhang L, et al. Among authors: chen d, chen w. Genome Biol. 2023 Apr 4;24(1):65. doi: 10.1186/s13059-023-02908-x. Genome Biol. 2023. PMID: 37016448 Free PMC article.

2

Molecular mechanisms of floral organ specification by MADS domain proteins.

Yan W, Chen D, Kaufmann K. Yan W, et al. Among authors: chen d. Curr Opin Plant Biol. 2016 Feb;29:154-62. doi: 10.1016/j.pbi.2015.12.004. Epub 2016 Jan 21. Curr Opin Plant Biol. 2016. PMID: 26802807 Review.

3

Efficient multiplex mutagenesis by RNA-guided Cas9 and its use in the characterization of regulatory elements in the AGAMOUS gene.

Yan W, Chen D, Kaufmann K. Yan W, et al. Among authors: chen d. Plant Methods. 2016 Apr 25;12:23. doi: 10.1186/s13007-016-0125-7. eCollection 2016. Plant Methods. 2016. PMID: 27118985 Free PMC article.

4

From Genes to Networks: Characterizing Gene-Regulatory Interactions in Plants.

Kaufmann K, Chen D. Kaufmann K, et al. Among authors: chen d. Methods Mol Biol. 2017;1629:1-11. doi: 10.1007/978-1-4939-7125-1_1. Methods Mol Biol. 2017. PMID: 28623575

5

Integration of Genome-Wide TF Binding and Gene Expression Data to Characterize Gene Regulatory Networks in Plant Development.

Chen D, Kaufmann K. Chen D, et al. Methods Mol Biol. 2017;1629:239-269. doi: 10.1007/978-1-4939-7125-1_16. Methods Mol Biol. 2017. PMID: 28623590

6

Differences in DNA Binding Specificity of Floral Homeotic Protein Complexes Predict Organ-Specific Target Genes.

Smaczniak C, Muiño JM, Chen D, Angenent GC, Kaufmann K. Smaczniak C, et al. Among authors: chen d. Plant Cell. 2017 Aug;29(8):1822-1835. doi: 10.1105/tpc.17.00145. Epub 2017 Jul 21. Plant Cell. 2017. PMID: 28733422 Free PMC article.

7

A practical guide for DNase-seq data analysis: from data management to common applications.

Liu Y, Fu L, Kaufmann K, Chen D, Chen M. Liu Y, et al. Among authors: chen m, chen d. Brief Bioinform. 2019 Sep 27;20(5):1865-1877. doi: 10.1093/bib/bby057. Brief Bioinform. 2019. PMID: 30010713 Review.

8

Dynamic and spatial restriction of Polycomb activity by plant histone demethylases.

Yan W, Chen D, Smaczniak C, Engelhorn J, Liu H, Yang W, Graf A, Carles CC, Zhou DX, Kaufmann K. Yan W, et al. Among authors: chen d. Nat Plants. 2018 Sep;4(9):681-689. doi: 10.1038/s41477-018-0219-5. Epub 2018 Aug 13. Nat Plants. 2018. PMID: 30104650

9

The HTPmod Shiny application enables modeling and visualization of large-scale biological data.

Chen D, Fu LY, Hu D, Klukas C, Chen M, Kaufmann K. Chen D, et al. Among authors: chen m. Commun Biol. 2018 Jul 5;1:89. doi: 10.1038/s42003-018-0091-x. eCollection 2018. Commun Biol. 2018. PMID: 30271970 Free PMC article.

10

Architecture of gene regulatory networks controlling flower development in Arabidopsis thaliana.

Chen D, Yan W, Fu LY, Kaufmann K. Chen D, et al. Nat Commun. 2018 Oct 31;9(1):4534. doi: 10.1038/s41467-018-06772-3. Nat Commun. 2018. PMID: 30382087 Free PMC article.

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