Davis MJ - Search Results

1

LSPpred Suite: Tools for Leaderless Secretory Protein Prediction in Plants.

Lonsdale A, Ceballos-Laita L, Takahashi D, Uemura M, Abadía J, Davis MJ, Bacic A, Doblin MS. Lonsdale A, et al. Among authors: davis mj. Plants (Basel). 2023 Mar 23;12(7):1428. doi: 10.3390/plants12071428. Plants (Basel). 2023. PMID: 37050054 Free PMC article.

2

Better Than Nothing? Limitations of the Prediction Tool SecretomeP in the Search for Leaderless Secretory Proteins (LSPs) in Plants.

Lonsdale A, Davis MJ, Doblin MS, Bacic A. Lonsdale A, et al. Among authors: davis mj. Front Plant Sci. 2016 Sep 27;7:1451. doi: 10.3389/fpls.2016.01451. eCollection 2016. Front Plant Sci. 2016. PMID: 27729919 Free PMC article.

3

Determining the Significance of Protein Network Features and Attributes Using Permutation Testing.

Cursons J, Davis MJ. Cursons J, et al. Among authors: davis mj. Methods Mol Biol. 2017;1549:199-208. doi: 10.1007/978-1-4939-6740-7_15. Methods Mol Biol. 2017. PMID: 27975293

4

standR: spatial transcriptomic analysis for GeoMx DSP data.

Liu N, Bhuva DD, Mohamed A, Bokelund M, Kulasinghe A, Tan CW, Davis MJ. Liu N, et al. Among authors: davis mj. Nucleic Acids Res. 2024 Jan 11;52(1):e2. doi: 10.1093/nar/gkad1026. Nucleic Acids Res. 2024. PMID: 37953397 Free PMC article.

5

Library size confounds biology in spatial transcriptomics data.

Bhuva DD, Tan CW, Salim A, Marceaux C, Pickering MA, Chen J, Kharbanda M, Jin X, Liu N, Feher K, Putri G, Tilley WD, Hickey TE, Asselin-Labat ML, Phipson B, Davis MJ. Bhuva DD, et al. Among authors: davis mj. Genome Biol. 2024 Apr 18;25(1):99. doi: 10.1186/s13059-024-03241-7. Genome Biol. 2024. PMID: 38637899 Free PMC article.

6

Differential co-expression-based detection of conditional relationships in transcriptional data: comparative analysis and application to breast cancer.

Bhuva DD, Cursons J, Smyth GK, Davis MJ. Bhuva DD, et al. Among authors: davis mj. Genome Biol. 2019 Nov 14;20(1):236. doi: 10.1186/s13059-019-1851-8. Genome Biol. 2019. PMID: 31727119 Free PMC article.

7

Large-scale protein-protein post-translational modification extraction with distant supervision and confidence calibrated BioBERT.

Elangovan A, Li Y, Pires DEV, Davis MJ, Verspoor K. Elangovan A, et al. Among authors: davis mj. BMC Bioinformatics. 2022 Jan 4;23(1):4. doi: 10.1186/s12859-021-04504-x. BMC Bioinformatics. 2022. PMID: 34983371 Free PMC article.

8

vissE.cloud: a webserver to visualise higher order molecular phenotypes from enrichment analysis.

Mohamed A, Bhuva DD, Lee S, Liu N, Tan CW, Davis MJ. Mohamed A, et al. Among authors: davis mj. Nucleic Acids Res. 2023 Jul 5;51(W1):W593-W600. doi: 10.1093/nar/gkad337. Nucleic Acids Res. 2023. PMID: 37158226 Free PMC article.

9

Molecular insight into targeting the NK cell immune response to cancer.

Rautela J, Souza-Fonseca-Guimaraes F, Hediyeh-Zadeh S, Delconte RB, Davis MJ, Huntington ND. Rautela J, et al. Among authors: davis mj. Immunol Cell Biol. 2018 May;96(5):477-484. doi: 10.1111/imcb.12045. Epub 2018 Apr 17. Immunol Cell Biol. 2018. PMID: 29577414 Review.

10

Spatial proteomics identifies a spectrum of immune dysregulation in acquired bone marrow failure syndromes.

Koldej RM, Prabahran A, Tan CW, Ludford-Menting M, Morgan H, Holzwart N, Davis MJ, Ritchie DS. Koldej RM, et al. Among authors: davis mj. Front Immunol. 2023 Sep 25;14:1213560. doi: 10.3389/fimmu.2023.1213560. eCollection 2023. Front Immunol. 2023. PMID: 37818364 Free PMC article.

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