Kim JY - Search Results

1

DeepNeo: a webserver for predicting immunogenic neoantigens.

Kim JY, Bang H, Noh SJ, Choi JK. Kim JY, et al. Nucleic Acids Res. 2023 Jul 5;51(W1):W134-W140. doi: 10.1093/nar/gkad275. Nucleic Acids Res. 2023. PMID: 37070174 Free PMC article.

2

Intersection of genetics and epigenetics in monozygotic twin genomes.

Kim K, Lee K, Bang H, Kim JY, Choi JK. Kim K, et al. Among authors: kim jy. Methods. 2016 Jun 1;102:50-6. doi: 10.1016/j.ymeth.2015.10.020. Epub 2015 Nov 5. Methods. 2016. PMID: 26548893 Review.

3

Frequent hypermethylation of orphan CpG islands with enhancer activity in cancer.

Bae MG, Kim JY, Choi JK. Bae MG, et al. Among authors: kim jy. BMC Med Genomics. 2016 Aug 12;9 Suppl 1(Suppl 1):38. doi: 10.1186/s12920-016-0198-1. BMC Med Genomics. 2016. PMID: 27534853 Free PMC article.

4

DNA methylation loss promotes immune evasion of tumours with high mutation and copy number load.

Jung H, Kim HS, Kim JY, Sun JM, Ahn JS, Ahn MJ, Park K, Esteller M, Lee SH, Choi JK. Jung H, et al. Among authors: kim jy, kim hs. Nat Commun. 2019 Sep 19;10(1):4278. doi: 10.1038/s41467-019-12159-9. Nat Commun. 2019. PMID: 31537801 Free PMC article.

5

Convolutional neural network model to predict causal risk factors that share complex regulatory features.

Lee T, Sung MK, Lee S, Yang W, Oh J, Kim JY, Hwang S, Ban HJ, Choi JK. Lee T, et al. Among authors: kim jy. Nucleic Acids Res. 2019 Dec 16;47(22):e146. doi: 10.1093/nar/gkz868. Nucleic Acids Res. 2019. PMID: 31598692 Free PMC article.

6

Predicting clinical benefit of immunotherapy by antigenic or functional mutations affecting tumour immunogenicity.

Kim K, Kim HS, Kim JY, Jung H, Sun JM, Ahn JS, Ahn MJ, Park K, Lee SH, Choi JK. Kim K, et al. Among authors: kim jy, kim hs. Nat Commun. 2020 Feb 19;11(1):951. doi: 10.1038/s41467-020-14562-z. Nat Commun. 2020. PMID: 32075964 Free PMC article.

7

Genome-wide methylation patterns predict clinical benefit of immunotherapy in lung cancer.

Kim JY, Choi JK, Jung H. Kim JY, et al. Clin Epigenetics. 2020 Aug 6;12(1):119. doi: 10.1186/s13148-020-00907-4. Clin Epigenetics. 2020. PMID: 32762727 Free PMC article.

8

Gene essentiality for tumour growth influences neoantigen-directed immunoediting.

Bang H, Park JS, Kim JY, Sung C, An J, Cho DY, Lee SH, Shim SB, Choi JK, Kim K. Bang H, et al. Among authors: kim jy, kim k. Clin Transl Med. 2022 Jan;12(1):e714. doi: 10.1002/ctm2.714. Clin Transl Med. 2022. PMID: 35060683 Free PMC article. No abstract available.

9

MHC II immunogenicity shapes the neoepitope landscape in human tumors.

Kim JY, Cha H, Kim K, Sung C, An J, Bang H, Kim H, Yang JO, Chang S, Shin I, Noh SJ, Shin I, Cho DY, Lee SH, Choi JK. Kim JY, et al. Among authors: kim h, kim k. Nat Genet. 2023 Feb;55(2):221-231. doi: 10.1038/s41588-022-01273-y. Epub 2023 Jan 9. Nat Genet. 2023. PMID: 36624345

10

Genomic hypomethylation in cell-free DNA predicts responses to checkpoint blockade in lung and breast cancer.

Kim K, Kim H, Shin I, Noh SJ, Kim JY, Suh KJ, Kim YN, Lee JY, Cho DY, Kim SH, Kim JH, Lee SH, Choi JK. Kim K, et al. Among authors: kim jy, kim h, kim yn, kim sh, kim jh. Sci Rep. 2023 Dec 18;13(1):22482. doi: 10.1038/s41598-023-49639-4. Sci Rep. 2023. PMID: 38110532 Free PMC article.

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