Xiong Y - Search Results

1

NetGO 3.0: Protein Language Model Improves Large-scale Functional Annotations.

Wang S, You R, Liu Y, Xiong Y, Zhu S. Wang S, et al. Among authors: xiong y. Genomics Proteomics Bioinformatics. 2023 Apr;21(2):349-358. doi: 10.1016/j.gpb.2023.04.001. Epub 2023 Apr 17. Genomics Proteomics Bioinformatics. 2023. PMID: 37075830 Free PMC article.

2

GOLabeler: improving sequence-based large-scale protein function prediction by learning to rank.

You R, Zhang Z, Xiong Y, Sun F, Mamitsuka H, Zhu S. You R, et al. Among authors: xiong y. Bioinformatics. 2018 Jul 15;34(14):2465-2473. doi: 10.1093/bioinformatics/bty130. Bioinformatics. 2018. PMID: 29522145

3

NetGO: improving large-scale protein function prediction with massive network information.

You R, Yao S, Xiong Y, Huang X, Sun F, Mamitsuka H, Zhu S. You R, et al. Among authors: xiong y. Nucleic Acids Res. 2019 Jul 2;47(W1):W379-W387. doi: 10.1093/nar/gkz388. Nucleic Acids Res. 2019. PMID: 31106361 Free PMC article.

4

NetGO 2.0: improving large-scale protein function prediction with massive sequence, text, domain, family and network information.

Yao S, You R, Wang S, Xiong Y, Huang X, Zhu S. Yao S, et al. Among authors: xiong y. Nucleic Acids Res. 2021 Jul 2;49(W1):W469-W475. doi: 10.1093/nar/gkab398. Nucleic Acids Res. 2021. PMID: 34038555 Free PMC article.

5

PLMSearch: Protein language model powers accurate and fast sequence search for remote homology.

Liu W, Wang Z, You R, Xie C, Wei H, Xiong Y, Yang J, Zhu S. Liu W, et al. Among authors: xiong y. Nat Commun. 2024 Mar 30;15(1):2775. doi: 10.1038/s41467-024-46808-5. Nat Commun. 2024. PMID: 38555371 Free PMC article.

6

Author Correction: PLMSearch: Protein language model powers accurate and fast sequence search for remote homology.

Liu W, Wang Z, You R, Xie C, Wei H, Xiong Y, Yang J, Zhu S. Liu W, et al. Among authors: xiong y. Nat Commun. 2024 Sep 5;15(1):7766. doi: 10.1038/s41467-024-52177-w. Nat Commun. 2024. PMID: 39237508 Free PMC article. No abstract available.

7

DTI-MLCD: predicting drug-target interactions using multi-label learning with community detection method.

Chu Y, Shan X, Chen T, Jiang M, Wang Y, Wang Q, Salahub DR, Xiong Y, Wei DQ. Chu Y, et al. Among authors: xiong y. Brief Bioinform. 2021 May 20;22(3):bbaa205. doi: 10.1093/bib/bbaa205. Brief Bioinform. 2021. PMID: 32964234

8

NeuroPpred-Fuse: an interpretable stacking model for prediction of neuropeptides by fusing sequence information and feature selection methods.

Jiang M, Zhao B, Luo S, Wang Q, Chu Y, Chen T, Mao X, Liu Y, Wang Y, Jiang X, Wei DQ, Xiong Y. Jiang M, et al. Among authors: xiong y. Brief Bioinform. 2021 Nov 5;22(6):bbab310. doi: 10.1093/bib/bbab310. Brief Bioinform. 2021. PMID: 34396388

9

scHiCStackL: a stacking ensemble learning-based method for single-cell Hi-C classification using cell embedding.

Wu H, Wu Y, Jiang Y, Zhou B, Zhou H, Chen Z, Xiong Y, Liu Q, Zhang H. Wu H, et al. Among authors: xiong y. Brief Bioinform. 2022 Jan 17;23(1):bbab396. doi: 10.1093/bib/bbab396. Brief Bioinform. 2022. PMID: 34553746

10

T4SEfinder: a bioinformatics tool for genome-scale prediction of bacterial type IV secreted effectors using pre-trained protein language model.

Zhang Y, Zhang Y, Xiong Y, Wang H, Deng Z, Song J, Ou HY. Zhang Y, et al. Among authors: xiong y. Brief Bioinform. 2022 Jan 17;23(1):bbab420. doi: 10.1093/bib/bbab420. Brief Bioinform. 2022. PMID: 34657153

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