Gao X - Search Results

1

Accurate transcriptome-wide identification and quantification of alternative polyadenylation from RNA-seq data with APAIQ.

Long Y, Zhang B, Tian S, Chan JJ, Zhou J, Li Z, Li Y, An Z, Liao X, Wang Y, Sun S, Xu Y, Tay Y, Chen W, Gao X. Long Y, et al. Among authors: gao x. Genome Res. 2023 Apr;33(4):644-657. doi: 10.1101/gr.277177.122. Epub 2023 Apr 28. Genome Res. 2023. PMID: 37117035 Free PMC article.

2

A deep learning framework to predict binding preference of RNA constituents on protein surface.

Lam JH, Li Y, Zhu L, Umarov R, Jiang H, Héliou A, Sheong FK, Liu T, Long Y, Li Y, Fang L, Altman RB, Chen W, Huang X, Gao X. Lam JH, et al. Among authors: gao x. Nat Commun. 2019 Oct 30;10(1):4941. doi: 10.1038/s41467-019-12920-0. Nat Commun. 2019. PMID: 31666519 Free PMC article.

3

Neural Functions Play Different Roles in Triple Negative Breast Cancer (TNBC) and non-TNBC.

Tan R, Li H, Huang Z, Zhou Y, Tao M, Gao X, Xu Y. Tan R, et al. Among authors: gao x. Sci Rep. 2020 Feb 20;10(1):3065. doi: 10.1038/s41598-020-60030-5. Sci Rep. 2020. PMID: 32080331 Free PMC article.

4

A sensitive repeat identification framework based on short and long reads.

Liao X, Li M, Hu K, Wu FX, Gao X, Wang J. Liao X, et al. Among authors: gao x. Nucleic Acids Res. 2021 Sep 27;49(17):e100. doi: 10.1093/nar/gkab563. Nucleic Acids Res. 2021. PMID: 34214175 Free PMC article.

5

msRepDB: a comprehensive repetitive sequence database of over 80 000 species.

Liao X, Hu K, Salhi A, Zou Y, Wang J, Gao X. Liao X, et al. Among authors: gao x. Nucleic Acids Res. 2022 Jan 7;50(D1):D236-D245. doi: 10.1093/nar/gkab1089. Nucleic Acids Res. 2022. PMID: 34850956 Free PMC article.

6

CRISPR-iPAS: a novel dCAS13-based method for alternative polyadenylation interference.

Tian S, Zhang B, He Y, Sun Z, Li J, Li Y, Yi H, Zhao Y, Zou X, Li Y, Cui H, Fang L, Gao X, Hu Y, Chen W. Tian S, et al. Among authors: gao x. Nucleic Acids Res. 2022 Mar 21;50(5):e26. doi: 10.1093/nar/gkac108. Nucleic Acids Res. 2022. PMID: 35191504 Free PMC article.

7

Pan-cancer pervasive upregulation of 3' UTR splicing drives tumourigenesis.

Chan JJ, Zhang B, Chew XH, Salhi A, Kwok ZH, Lim CY, Desi N, Subramaniam N, Siemens A, Kinanti T, Ong S, Sanchez-Mejias A, Ly PT, An O, Sundar R, Fan X, Wang S, Siew BE, Lee KC, Chong CS, Lieske B, Cheong WK, Goh Y, Fam WN, Ooi MG, Koh BTH, Iyer SG, Ling WH, Chen J, Yoong BK, Chanwat R, Bonney GK, Goh BKP, Zhai W, Fullwood MJ, Wang W, Tan KK, Chng WJ, Dan YY, Pitt JJ, Roca X, Guccione E, Vardy LA, Chen L, Gao X, Chow PKH, Yang H, Tay Y. Chan JJ, et al. Among authors: gao x. Nat Cell Biol. 2022 Jun;24(6):928-939. doi: 10.1038/s41556-022-00913-z. Epub 2022 May 26. Nat Cell Biol. 2022. PMID: 35618746 Free PMC article.

8

The SWI/SNF chromatin remodeling factor DPF3 regulates metastasis of ccRCC by modulating TGF-β signaling.

Cui H, Yi H, Bao H, Tan Y, Tian C, Shi X, Gan D, Zhang B, Liang W, Chen R, Zhu Q, Fang L, Gao X, Huang H, Tian R, Sperling SR, Hu Y, Chen W. Cui H, et al. Among authors: gao x. Nat Commun. 2022 Aug 9;13(1):4680. doi: 10.1038/s41467-022-32472-0. Nat Commun. 2022. PMID: 35945219 Free PMC article.

9

Annotating TSSs in Multiple Cell Types Based on DNA Sequence and RNA-seq Data via DeeReCT-TSS.

Zhou J, Zhang B, Li H, Zhou L, Li Z, Long Y, Han W, Wang M, Cui H, Li J, Chen W, Gao X. Zhou J, et al. Among authors: gao x. Genomics Proteomics Bioinformatics. 2022 Oct;20(5):959-973. doi: 10.1016/j.gpb.2022.11.010. Epub 2022 Dec 15. Genomics Proteomics Bioinformatics. 2022. PMID: 36528241 Free PMC article.

10

Applications of deep learning in understanding gene regulation.

Li Z, Gao E, Zhou J, Han W, Xu X, Gao X. Li Z, et al. Among authors: gao e, gao x. Cell Rep Methods. 2023 Jan 11;3(1):100384. doi: 10.1016/j.crmeth.2022.100384. eCollection 2023 Jan 23. Cell Rep Methods. 2023. PMID: 36814848 Free PMC article. Review.

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