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The ClusPro AbEMap web server for the prediction of antibody epitopes.
Desta IT, Kotelnikov S, Jones G, Ghani U, Abyzov M, Kholodov Y, Standley DM, Beglov D, Vajda S, Kozakov D. Desta IT, et al. Among authors: standley dm. Nat Protoc. 2023 Jun;18(6):1814-1840. doi: 10.1038/s41596-023-00826-7. Epub 2023 May 15. Nat Protoc. 2023. PMID: 37188806 Free PMC article. Review.
Bacterial induction of B cell senescence promotes age-related changes in the gut microbiota.
Kawamoto S, Uemura K, Hori N, Takayasu L, Konishi Y, Katoh K, Matsumoto T, Suzuki M, Sakai Y, Matsudaira T, Adachi T, Ohtani N, Standley DM, Suda W, Fukuda S, Hara E. Kawamoto S, et al. Among authors: standley dm. Nat Cell Biol. 2023 Jun;25(6):865-876. doi: 10.1038/s41556-023-01145-5. Epub 2023 May 11. Nat Cell Biol. 2023. PMID: 37169880
BCR, not TCR, repertoire diversity is associated with favorable COVID-19 prognosis.
Paran FJ, Oyama R, Khasawneh A, Ai T, Ismanto HS, Sherif AA, Saputri DS, Ono C, Saita M, Takei S, Horiuchi Y, Yagi K, Matsuura Y, Okazaki Y, Takahashi K, Standley DM, Tabe Y, Naito T. Paran FJ, et al. Among authors: standley dm. Front Immunol. 2024 Oct 28;15:1405013. doi: 10.3389/fimmu.2024.1405013. eCollection 2024. Front Immunol. 2024. PMID: 39530088 Free PMC article.
Clonal landscape of autoantibody-secreting plasmablasts in COVID-19 patients.
Sakakibara S, Liu YC, Ishikawa M, Edahiro R, Shirai Y, Haruna S, El Hussien MA, Xu Z, Li S, Yamaguchi Y, Murakami T, Morita T, Kato Y, Hirata H, Takeda Y, Sugihara F, Naito Y, Motooka D, Tsai CY, Ono C, Matsuura Y, Wing JB, Matsumoto H, Ogura H, Okada M, Kumanogoh A, Okada Y, Standley DM, Kikutani H, Okuzaki D. Sakakibara S, et al. Among authors: standley dm. Life Sci Alliance. 2024 Sep 17;7(12):e202402774. doi: 10.26508/lsa.202402774. Print 2024 Dec. Life Sci Alliance. 2024. PMID: 39288992 Free PMC article.
Structural basis of Irgb6 inactivation by Toxoplasma gondii through the phosphorylation of switch I.
Okuma H, Saijo-Hamano Y, Yamada H, Sherif AA, Hashizaki E, Sakai N, Kato T, Imasaki T, Kikkawa S, Nitta E, Sasai M, Abe T, Sugihara F, Maniwa Y, Kosako H, Takei K, Standley DM, Yamamoto M, Nitta R. Okuma H, et al. Among authors: standley dm. Genes Cells. 2024 Jan;29(1):17-38. doi: 10.1111/gtc.13080. Epub 2023 Nov 20. Genes Cells. 2024. PMID: 37984375 Free PMC article.
Regulation of lymphoid-myeloid lineage bias through regnase-1/3-mediated control of Nfkbiz.
Uehata T, Yamada S, Ori D, Vandenbon A, Giladi A, Jelinski A, Murakawa Y, Watanabe H, Takeuchi K, Toratani K, Mino T, Kiryu H, Standley DM, Tsujimura T, Ikawa T, Kondoh G, Landthaler M, Kawamoto H, Rodewald HR, Amit I, Yamamoto R, Miyazaki M, Takeuchi O. Uehata T, et al. Among authors: standley dm. Blood. 2024 Jan 18;143(3):243-257. doi: 10.1182/blood.2023020903. Blood. 2024. PMID: 37922454 Free PMC article.
132 results