Xu B - Search Results

1

Phosphorylation of 53BP1 by ATM enforce neurodevelopmental programs in cortical organoids.

Lim B, Djekidel MN, Matsui Y, Jung S, Yuan ZF, Wang X, Yang X, Pilehroud AS, Pan H, Wang F, Pruett-Miller S, Kavdia K, Pagala V, Fan Y, Peng J, Xu B, Peng JC. Lim B, et al. Among authors: xu b. bioRxiv [Preprint]. 2023 May 4:2023.05.04.539457. doi: 10.1101/2023.05.04.539457. bioRxiv. 2023. Update in: PLoS Biol. 2024 Sep 3;22(9):e3002760. doi: 10.1371/journal.pbio.3002760 PMID: 37205560 Free PMC article. Updated. Preprint.

2

Differentiation of human pluripotent stem cells into neurons or cortical organoids requires transcriptional co-regulation by UTX and 53BP1.

Yang X, Xu B, Mulvey B, Evans M, Jordan S, Wang YD, Pagala V, Peng J, Fan Y, Patel A, Peng JC. Yang X, et al. Among authors: xu b. Nat Neurosci. 2019 Mar;22(3):362-373. doi: 10.1038/s41593-018-0328-5. Epub 2019 Feb 4. Nat Neurosci. 2019. PMID: 30718900 Free PMC article.

3

Ybx1 fine-tunes PRC2 activities to control embryonic brain development.

Evans MK, Matsui Y, Xu B, Willis C, Loome J, Milburn L, Fan Y, Pagala V, Peng JC. Evans MK, et al. Among authors: xu b. Nat Commun. 2020 Aug 13;11(1):4060. doi: 10.1038/s41467-020-17878-y. Nat Commun. 2020. PMID: 32792512 Free PMC article.

4

UTX/KDM6A suppresses AP-1 and a gliogenesis program during neural differentiation of human pluripotent stem cells.

Xu B, Mulvey B, Salie M, Yang X, Matsui Y, Nityanandam A, Fan Y, Peng JC. Xu B, et al. Epigenetics Chromatin. 2020 Sep 25;13(1):38. doi: 10.1186/s13072-020-00359-3. Epigenetics Chromatin. 2020. PMID: 32977832 Free PMC article.

5

CovidExpress: an interactive portal for intuitive investigation on SARS-CoV-2 related transcriptomes.

Djekidel MN, Rosikiewicz W, Peng JC, Kanneganti TD, Hui Y, Jin H, Hedges D, Schreiner P, Fan Y, Wu G, Xu B. Djekidel MN, et al. Among authors: xu b. bioRxiv [Preprint]. 2021 Aug 5:2021.05.14.444026. doi: 10.1101/2021.05.14.444026. bioRxiv. 2021. PMID: 34075382 Free PMC article. Preprint.

6

Acute depletion of CTCF rewires genome-wide chromatin accessibility.

Xu B, Wang H, Wright S, Hyle J, Zhang Y, Shao Y, Niu M, Fan Y, Rosikiewicz W, Djekidel MN, Peng J, Lu R, Li C. Xu B, et al. Genome Biol. 2021 Aug 24;22(1):244. doi: 10.1186/s13059-021-02466-0. Genome Biol. 2021. PMID: 34429148 Free PMC article.

7

Author Correction: Ybx1 fine-tunes PRC2 activities to control embryonic brain development.

Evans MK, Matsui Y, Xu B, Willis C, Loome J, Milburn L, Fan Y, Pagala V, Peng JC. Evans MK, et al. Among authors: xu b. Nat Commun. 2023 Jan 25;14(1):412. doi: 10.1038/s41467-023-36069-z. Nat Commun. 2023. PMID: 36697392 Free PMC article. No abstract available.

8

Auxin-inducible degron 2 system deciphers functions of CTCF domains in transcriptional regulation.

Hyle J, Djekidel MN, Williams J, Wright S, Shao Y, Xu B, Li C. Hyle J, et al. Among authors: xu b. Genome Biol. 2023 Jan 26;24(1):14. doi: 10.1186/s13059-022-02843-3. Genome Biol. 2023. PMID: 36698211 Free PMC article.

9

SNIP1 and PRC2 coordinate cell fates of neural progenitors during brain development.

Matsui Y, Djekidel MN, Lindsay K, Samir P, Connolly N, Wu G, Yang X, Fan Y, Xu B, Peng JC. Matsui Y, et al. Among authors: xu b. Nat Commun. 2023 Aug 8;14(1):4754. doi: 10.1038/s41467-023-40487-4. Nat Commun. 2023. PMID: 37553330 Free PMC article.

10

Dynamic Foxp3-chromatin interaction controls tunable Treg cell function.

He M, Zong X, Xu B, Qi W, Huang W, Djekidel MN, Zhang Y, Pagala VR, Li J, Hao X, Guy C, Bai L, Cross R, Li C, Peng J, Feng Y. He M, et al. Among authors: xu b. J Exp Med. 2024 Sep 2;221(9):e20232068. doi: 10.1084/jem.20232068. Epub 2024 Jun 27. J Exp Med. 2024. PMID: 38935023 Free PMC article.

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